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Cluster: HRGMv2_4406_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4406_2 HRGMv2_4406_2_11 11027 12052 - GH179
TC HRGMv2_4406_2 HRGMv2_4406_2_12 12091 12933 - 3.A.1.1.7
TC HRGMv2_4406_2 HRGMv2_4406_2_13 12935 13834 - 3.A.1.1.37
TC HRGMv2_4406_2 HRGMv2_4406_2_14 13947 15365 - 3.A.1.1.5
STP HRGMv2_4406_2 HRGMv2_4406_2_15 15438 16340 - SIS
pfam HRGMv2_4406_2 HRGMv2_4406_2_16 16680 17558 - Lactamase_B
TC HRGMv2_4406_2 HRGMv2_4406_2_17 17639 19117 - 3.A.1.121.5
Gene ID: HRGMv2_4406_2_11
Type: CAZyme
Location: 11027 - 12052 (-)
Gene ID: HRGMv2_4406_2_12
Type: TC
Location: 12091 - 12933 (-)
Gene ID: HRGMv2_4406_2_13
Type: TC
Location: 12935 - 13834 (-)
Gene ID: HRGMv2_4406_2_14
Type: TC
Location: 13947 - 15365 (-)
Gene ID: HRGMv2_4406_2_15
Type: STP
Location: 15438 - 16340 (-)
Gene ID: HRGMv2_4406_2_16
Type: pfam
Location: 16680 - 17558 (-)
Gene ID: HRGMv2_4406_2_17
Type: TC
Location: 17639 - 19117 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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