Cluster: HRGMv2_4406_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4406
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4406_66 | HRGMv2_4406_66_2 | 984 | 1868 | + | 3.A.1.1.20 |
| TC | HRGMv2_4406_66 | HRGMv2_4406_66_3 | 1884 | 2780 | + | 3.A.1.1.25 |
| pfam | HRGMv2_4406_66 | HRGMv2_4406_66_4 | 2810 | 2986 | + | DUF6903 |
| CAZyme | HRGMv2_4406_66 | HRGMv2_4406_66_5 | 3003 | 5180 | + | GH112 |
Gene ID: HRGMv2_4406_66_2
Type: TC
Location: 984 - 1868 (+)
Type: TC
Location: 984 - 1868 (+)
Gene ID: HRGMv2_4406_66_3
Type: TC
Location: 1884 - 2780 (+)
Type: TC
Location: 1884 - 2780 (+)
Gene ID: HRGMv2_4406_66_4
Type: pfam
Location: 2810 - 2986 (+)
Type: pfam
Location: 2810 - 2986 (+)
Gene ID: HRGMv2_4406_66_5
Type: CAZyme
Location: 3003 - 5180 (+)
Type: CAZyme
Location: 3003 - 5180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.