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Cluster: HRGMv2_4406_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4406_62 HRGMv2_4406_62_2 903 2027 - GH53
NULL(UNKNOWN) HRGMv2_4406_62 HRGMv2_4406_62_3 2110 2337 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4406_62 HRGMv2_4406_62_4 2310 4175 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4406_62 HRGMv2_4406_62_5 4211 5065 - 3.A.1.1.27
TC HRGMv2_4406_62 HRGMv2_4406_62_6 5062 6525 - 3.A.1.1.27
pfam HRGMv2_4406_62 HRGMv2_4406_62_7 6615 7982 - SBP_bac_8
TF HRGMv2_4406_62 HRGMv2_4406_62_8 8174 9190 - LacI
CAZyme HRGMv2_4406_62 HRGMv2_4406_62_9 9334 10176 + GH42
Gene ID: HRGMv2_4406_62_2
Type: CAZyme
Location: 903 - 2027 (-)
Gene ID: HRGMv2_4406_62_3
Type:
Location: 2110 - 2337 (-)
Gene ID: HRGMv2_4406_62_4
Type:
Location: 2310 - 4175 (-)
Gene ID: HRGMv2_4406_62_5
Type: TC
Location: 4211 - 5065 (-)
Gene ID: HRGMv2_4406_62_6
Type: TC
Location: 5062 - 6525 (-)
Gene ID: HRGMv2_4406_62_7
Type: pfam
Location: 6615 - 7982 (-)
Gene ID: HRGMv2_4406_62_8
Type: TF
Location: 8174 - 9190 (-)
Gene ID: HRGMv2_4406_62_9
Type: CAZyme
Location: 9334 - 10176 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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