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Cluster: HRGMv2_4406_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4406_40 HRGMv2_4406_40_16 12585 13196 - 2.A.115.2.14
NULL(UNKNOWN) HRGMv2_4406_40 HRGMv2_4406_40_17 13283 13711 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4406_40 HRGMv2_4406_40_18 13856 15100 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4406_40 HRGMv2_4406_40_19 15198 16385 - 3.B.1.1.2
TC HRGMv2_4406_40 HRGMv2_4406_40_20 16398 16793 - 3.B.1.1.2
pfam HRGMv2_4406_40 HRGMv2_4406_40_21 16796 17146 - OAD_gamma
TC HRGMv2_4406_40 HRGMv2_4406_40_22 17159 18559 - 3.B.1.1.6
pfam HRGMv2_4406_40 HRGMv2_4406_40_23 18719 20323 - PEPCK_ATP
NULL(UNKNOWN) HRGMv2_4406_40 HRGMv2_4406_40_24 21057 21311 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4406_40 HRGMv2_4406_40_25 21503 22300 - CE1
Gene ID: HRGMv2_4406_40_16
Type: TC
Location: 12585 - 13196 (-)
Gene ID: HRGMv2_4406_40_17
Type:
Location: 13283 - 13711 (-)
Gene ID: HRGMv2_4406_40_18
Type: pfam
Location: 13856 - 15100 (+)
Gene ID: HRGMv2_4406_40_19
Type: TC
Location: 15198 - 16385 (-)
Gene ID: HRGMv2_4406_40_20
Type: TC
Location: 16398 - 16793 (-)
Gene ID: HRGMv2_4406_40_21
Type: pfam
Location: 16796 - 17146 (-)
Gene ID: HRGMv2_4406_40_22
Type: TC
Location: 17159 - 18559 (-)
Gene ID: HRGMv2_4406_40_23
Type: pfam
Location: 18719 - 20323 (-)
Gene ID: HRGMv2_4406_40_24
Type:
Location: 21057 - 21311 (+)
Gene ID: HRGMv2_4406_40_25
Type: CAZyme
Location: 21503 - 22300 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4406_40_16 vegetarian > vegan 1.11780 0.00842
HRGMv2_4406_40_20 vegetarian > vegan 1.44888 0.00842

🧭 Explore Read Mapping of CGC

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