Cluster: HRGMv2_4406_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4406
- CGC Family ID: CGCFAM_01754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4406_39 | HRGMv2_4406_39_12 | 11300 | 12562 | - | GT2 |
| pfam | HRGMv2_4406_39 | HRGMv2_4406_39_13 | 12549 | 13262 | - | VTT_dom |
| pfam | HRGMv2_4406_39 | HRGMv2_4406_39_14 | 13478 | 14467 | - | NMT1 | NMT1_2 |
| TC | HRGMv2_4406_39 | HRGMv2_4406_39_15 | 14464 | 15276 | - | 3.A.1.17.6 |
| TC | HRGMv2_4406_39 | HRGMv2_4406_39_16 | 15269 | 16024 | - | 3.A.1.17.8 |
Gene ID: HRGMv2_4406_39_12
Type: CAZyme
Location: 11300 - 12562 (-)
Type: CAZyme
Location: 11300 - 12562 (-)
Gene ID: HRGMv2_4406_39_13
Type: pfam
Location: 12549 - 13262 (-)
Type: pfam
Location: 12549 - 13262 (-)
Gene ID: HRGMv2_4406_39_14
Type: pfam
Location: 13478 - 14467 (-)
Type: pfam
Location: 13478 - 14467 (-)
Gene ID: HRGMv2_4406_39_15
Type: TC
Location: 14464 - 15276 (-)
Type: TC
Location: 14464 - 15276 (-)
Gene ID: HRGMv2_4406_39_16
Type: TC
Location: 15269 - 16024 (-)
Type: TC
Location: 15269 - 16024 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.