Cluster: HRGMv2_4406_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4406
- CGC Family ID: CGCFAM_00010
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4406_35 | HRGMv2_4406_35_1 | 393 | 1853 | - | GH77 |
| CAZyme | HRGMv2_4406_35 | HRGMv2_4406_35_2 | 1862 | 4120 | - | GT35 |
| TF | HRGMv2_4406_35 | HRGMv2_4406_35_3 | 4299 | 5297 | + | LacI |
| TC | HRGMv2_4406_35 | HRGMv2_4406_35_4 | 5512 | 6750 | + | 2.A.23.1.5 |
Gene ID: HRGMv2_4406_35_1
Type: CAZyme
Location: 393 - 1853 (-)
Type: CAZyme
Location: 393 - 1853 (-)
Gene ID: HRGMv2_4406_35_2
Type: CAZyme
Location: 1862 - 4120 (-)
Type: CAZyme
Location: 1862 - 4120 (-)
Gene ID: HRGMv2_4406_35_3
Type: TF
Location: 4299 - 5297 (+)
Type: TF
Location: 4299 - 5297 (+)
Gene ID: HRGMv2_4406_35_4
Type: TC
Location: 5512 - 6750 (+)
Type: TC
Location: 5512 - 6750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4406_35_4 | vegetarian > vegan | 1.35219 | 0.00842 |