Cluster: HRGMv2_4406_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4406
- CGC Family ID: CGCFAM_00989
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4406_33 | HRGMv2_4406_33_2 | 905 | 2665 | - | GH31_7 |
| TC | HRGMv2_4406_33 | HRGMv2_4406_33_3 | 2674 | 3501 | - | 3.A.1.1.39 |
| TC | HRGMv2_4406_33 | HRGMv2_4406_33_4 | 3491 | 4420 | - | 3.A.1.1.11 |
| TC | HRGMv2_4406_33 | HRGMv2_4406_33_5 | 4481 | 5833 | - | 3.A.1.1.44 |
| TF | HRGMv2_4406_33 | HRGMv2_4406_33_6 | 5982 | 6998 | - | LacI |
| CAZyme | HRGMv2_4406_33 | HRGMv2_4406_33_7 | 7183 | 8970 | + | GH125 |
| CAZyme | HRGMv2_4406_33 | HRGMv2_4406_33_8 | 8967 | 10967 | + | GH65 |
Gene ID: HRGMv2_4406_33_2
Type: CAZyme
Location: 905 - 2665 (-)
Type: CAZyme
Location: 905 - 2665 (-)
Gene ID: HRGMv2_4406_33_3
Type: TC
Location: 2674 - 3501 (-)
Type: TC
Location: 2674 - 3501 (-)
Gene ID: HRGMv2_4406_33_4
Type: TC
Location: 3491 - 4420 (-)
Type: TC
Location: 3491 - 4420 (-)
Gene ID: HRGMv2_4406_33_5
Type: TC
Location: 4481 - 5833 (-)
Type: TC
Location: 4481 - 5833 (-)
Gene ID: HRGMv2_4406_33_6
Type: TF
Location: 5982 - 6998 (-)
Type: TF
Location: 5982 - 6998 (-)
Gene ID: HRGMv2_4406_33_7
Type: CAZyme
Location: 7183 - 8970 (+)
Type: CAZyme
Location: 7183 - 8970 (+)
Gene ID: HRGMv2_4406_33_8
Type: CAZyme
Location: 8967 - 10967 (+)
Type: CAZyme
Location: 8967 - 10967 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Avoscillospira
Species
Avoscillospira stercoripullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.