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Cluster: HRGMv2_4401_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4401_35 HRGMv2_4401_35_7 5721 6914 + 2.A.23.2.10
pfam HRGMv2_4401_35 HRGMv2_4401_35_8 6942 7514 + PAP2
pfam HRGMv2_4401_35 HRGMv2_4401_35_9 7515 8933 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_4401_35 HRGMv2_4401_35_10 9311 10330 - GH177
pfam HRGMv2_4401_35 HRGMv2_4401_35_11 10375 11385 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC HRGMv2_4401_35 HRGMv2_4401_35_12 11415 12851 - 2.A.2.3.3
Gene ID: HRGMv2_4401_35_7
Type: TC
Location: 5721 - 6914 (+)
Gene ID: HRGMv2_4401_35_8
Type: pfam
Location: 6942 - 7514 (+)
Gene ID: HRGMv2_4401_35_9
Type: pfam
Location: 7515 - 8933 (+)
Gene ID: HRGMv2_4401_35_10
Type: CAZyme
Location: 9311 - 10330 (-)
Gene ID: HRGMv2_4401_35_11
Type: pfam
Location: 10375 - 11385 (-)
Gene ID: HRGMv2_4401_35_12
Type: TC
Location: 11415 - 12851 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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