Cluster: HRGMv2_4401_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4401
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4401_5 | HRGMv2_4401_5_4 | 2340 | 3494 | - | CE9 |
| STP | HRGMv2_4401_5 | HRGMv2_4401_5_5 | 3664 | 3921 | - | PTS-HPr |
| NULL(UNKNOWN) | HRGMv2_4401_5 | HRGMv2_4401_5_6 | 4337 | 4672 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4401_5 | HRGMv2_4401_5_7 | 4920 | 6287 | + | 2.A.38.1.1 |
| TC | HRGMv2_4401_5 | HRGMv2_4401_5_8 | 6284 | 7729 | + | 2.A.38.1.1 |
| TC | HRGMv2_4401_5 | HRGMv2_4401_5_9 | 7808 | 8371 | - | 2.A.107.1.2 |
Gene ID: HRGMv2_4401_5_4
Type: CAZyme
Location: 2340 - 3494 (-)
Type: CAZyme
Location: 2340 - 3494 (-)
Gene ID: HRGMv2_4401_5_5
Type: STP
Location: 3664 - 3921 (-)
Type: STP
Location: 3664 - 3921 (-)
Gene ID: HRGMv2_4401_5_6
Type:
Location: 4337 - 4672 (+)
Type:
Location: 4337 - 4672 (+)
Gene ID: HRGMv2_4401_5_7
Type: TC
Location: 4920 - 6287 (+)
Type: TC
Location: 4920 - 6287 (+)
Gene ID: HRGMv2_4401_5_8
Type: TC
Location: 6284 - 7729 (+)
Type: TC
Location: 6284 - 7729 (+)
Gene ID: HRGMv2_4401_5_9
Type: TC
Location: 7808 - 8371 (-)
Type: TC
Location: 7808 - 8371 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Butyricicoccaceae
Genus
Agathobaculum
Species
Agathobaculum pullistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4401_5_6 | vegetarian > omnivore | 1.00957 | 0.04449 |
| HRGMv2_4401_5_6 | vegetarian > vegan | 1.70386 | 0.02892 |