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Cluster: HRGMv2_4401_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4401_1 HRGMv2_4401_1_23 19017 20438 + 2.A.22.5.2
CAZyme HRGMv2_4401_1 HRGMv2_4401_1_24 20879 21991 - CE9
sulfatase HRGMv2_4401_1 HRGMv2_4401_1_25 22011 22748 - S1_9
TC HRGMv2_4401_1 HRGMv2_4401_1_26 22961 24442 - 4.A.1.1.7
TC HRGMv2_4401_1 HRGMv2_4401_1_27 24583 25077 - 4.A.1.2.2
pfam HRGMv2_4401_1 HRGMv2_4401_1_28 25394 26230 - PRD | PRD | CAT_RBD
TC HRGMv2_4401_1 HRGMv2_4401_1_29 26247 26864 - 9.B.158.1.1
Gene ID: HRGMv2_4401_1_23
Type: TC
Location: 19017 - 20438 (+)
Gene ID: HRGMv2_4401_1_24
Type: CAZyme
Location: 20879 - 21991 (-)
Gene ID: HRGMv2_4401_1_25
Type: sulfatase
Location: 22011 - 22748 (-)
Gene ID: HRGMv2_4401_1_26
Type: TC
Location: 22961 - 24442 (-)
Gene ID: HRGMv2_4401_1_27
Type: TC
Location: 24583 - 25077 (-)
Gene ID: HRGMv2_4401_1_28
Type: pfam
Location: 25394 - 26230 (-)
Gene ID: HRGMv2_4401_1_29
Type: TC
Location: 26247 - 26864 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4401_1_24 vegetarian > omnivore 1.68886 0.04449

🧭 Explore Read Mapping of CGC

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