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Cluster: HRGMv2_4399_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4399_12 HRGMv2_4399_12_12 13270 14772 - GH39
CAZyme HRGMv2_4399_12 HRGMv2_4399_12_13 14780 16264 - GH39
NULL(UNKNOWN) HRGMv2_4399_12 HRGMv2_4399_12_14 17150 18955 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4399_12 HRGMv2_4399_12_15 19037 19537 + 3.D.1.5.1
TC HRGMv2_4399_12 HRGMv2_4399_12_16 19549 20151 + 3.D.1.5.1
TC HRGMv2_4399_12 HRGMv2_4399_12_17 20228 21448 + 3.D.1.5.1
pfam HRGMv2_4399_12 HRGMv2_4399_12_18 21472 22020 + 2Fe-2S_thioredx
TC HRGMv2_4399_12 HRGMv2_4399_12_19 22034 23398 + 3.D.1.3.1
Gene ID: HRGMv2_4399_12_12
Type: CAZyme
Location: 13270 - 14772 (-)
Gene ID: HRGMv2_4399_12_13
Type: CAZyme
Location: 14780 - 16264 (-)
Gene ID: HRGMv2_4399_12_14
Type:
Location: 17150 - 18955 (+)
Gene ID: HRGMv2_4399_12_15
Type: TC
Location: 19037 - 19537 (+)
Gene ID: HRGMv2_4399_12_16
Type: TC
Location: 19549 - 20151 (+)
Gene ID: HRGMv2_4399_12_17
Type: TC
Location: 20228 - 21448 (+)
Gene ID: HRGMv2_4399_12_18
Type: pfam
Location: 21472 - 22020 (+)
Gene ID: HRGMv2_4399_12_19
Type: TC
Location: 22034 - 23398 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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