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Cluster: HRGMv2_4398_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4398_152 HRGMv2_4398_152_12 7379 9445 - GH50
CAZyme HRGMv2_4398_152 HRGMv2_4398_152_13 9442 11538 - GH50
pfam HRGMv2_4398_152 HRGMv2_4398_152_14 12166 14469 - UvrA_DNA-bind | UvrA_inter
TC HRGMv2_4398_152 HRGMv2_4398_152_15 15151 16332 + 2.A.86.1.8
STP HRGMv2_4398_152 HRGMv2_4398_152_16 16376 17590 + Response_reg | SpoIIE
pfam HRGMv2_4398_152 HRGMv2_4398_152_17 17587 18009 + HATPase_c_2
TC HRGMv2_4398_152 HRGMv2_4398_152_18 18009 18836 + 3.A.1.5.2
TC HRGMv2_4398_152 HRGMv2_4398_152_19 18820 19635 + 3.A.1.5.19
TC HRGMv2_4398_152 HRGMv2_4398_152_20 19638 21281 + 3.A.1.5.22
TC HRGMv2_4398_152 HRGMv2_4398_152_21 21278 22207 + 3.A.1.5.22
TC HRGMv2_4398_152 HRGMv2_4398_152_22 22213 23058 + 3.A.1.5.22
Gene ID: HRGMv2_4398_152_12
Type: CAZyme
Location: 7379 - 9445 (-)
Gene ID: HRGMv2_4398_152_13
Type: CAZyme
Location: 9442 - 11538 (-)
Gene ID: HRGMv2_4398_152_14
Type: pfam
Location: 12166 - 14469 (-)
Gene ID: HRGMv2_4398_152_15
Type: TC
Location: 15151 - 16332 (+)
Gene ID: HRGMv2_4398_152_16
Type: STP
Location: 16376 - 17590 (+)
Gene ID: HRGMv2_4398_152_17
Type: pfam
Location: 17587 - 18009 (+)
Gene ID: HRGMv2_4398_152_18
Type: TC
Location: 18009 - 18836 (+)
Gene ID: HRGMv2_4398_152_19
Type: TC
Location: 18820 - 19635 (+)
Gene ID: HRGMv2_4398_152_20
Type: TC
Location: 19638 - 21281 (+)
Gene ID: HRGMv2_4398_152_21
Type: TC
Location: 21278 - 22207 (+)
Gene ID: HRGMv2_4398_152_22
Type: TC
Location: 22213 - 23058 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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