Cluster: HRGMv2_4386_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4386
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4386_61 | HRGMv2_4386_61_1 | 1 | 657 | - | 2.A.5.5.5 |
| NULL(UNKNOWN) | HRGMv2_4386_61 | HRGMv2_4386_61_2 | 835 | 1563 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4386_61 | HRGMv2_4386_61_3 | 1560 | 2312 | - | CE14 |
| pfam | HRGMv2_4386_61 | HRGMv2_4386_61_4 | 2328 | 3032 | - | Vut_1 |
| pfam | HRGMv2_4386_61 | HRGMv2_4386_61_5 | 3068 | 4153 | - | MMR_HSR1 | FeoB_N | YchF-GTPase_C |
| TC | HRGMv2_4386_61 | HRGMv2_4386_61_6 | 4293 | 5801 | + | 2.A.86.1.6 |
Gene ID: HRGMv2_4386_61_1
Type: TC
Location: 1 - 657 (-)
Type: TC
Location: 1 - 657 (-)
Gene ID: HRGMv2_4386_61_2
Type:
Location: 835 - 1563 (+)
Type:
Location: 835 - 1563 (+)
Gene ID: HRGMv2_4386_61_3
Type: CAZyme
Location: 1560 - 2312 (-)
Type: CAZyme
Location: 1560 - 2312 (-)
Gene ID: HRGMv2_4386_61_4
Type: pfam
Location: 2328 - 3032 (-)
Type: pfam
Location: 2328 - 3032 (-)
Gene ID: HRGMv2_4386_61_5
Type: pfam
Location: 3068 - 4153 (-)
Type: pfam
Location: 3068 - 4153 (-)
Gene ID: HRGMv2_4386_61_6
Type: TC
Location: 4293 - 5801 (+)
Type: TC
Location: 4293 - 5801 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Mycobacteriales
Family
Mycobacteriaceae
Genus
Corynebacterium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.