Cluster: HRGMv2_4385_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4385
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4385_5 | HRGMv2_4385_5_75 | 74974 | 76725 | - | 3.B.1.1.6 |
| TC | HRGMv2_4385_5 | HRGMv2_4385_5_76 | 76817 | 78010 | - | 3.B.1.1.2 |
| TC | HRGMv2_4385_5 | HRGMv2_4385_5_77 | 78057 | 78671 | - | 3.B.1.1.2 |
| pfam | HRGMv2_4385_5 | HRGMv2_4385_5_78 | 79077 | 80516 | + | Lyase_1 | ADSL_C |
| TC | HRGMv2_4385_5 | HRGMv2_4385_5_79 | 80587 | 82032 | + | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_4385_5 | HRGMv2_4385_5_80 | 82087 | 83196 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4385_5 | HRGMv2_4385_5_81 | 83193 | 84134 | + | GT2 |
Gene ID: HRGMv2_4385_5_75
Type: TC
Location: 74974 - 76725 (-)
Type: TC
Location: 74974 - 76725 (-)
Gene ID: HRGMv2_4385_5_76
Type: TC
Location: 76817 - 78010 (-)
Type: TC
Location: 76817 - 78010 (-)
Gene ID: HRGMv2_4385_5_77
Type: TC
Location: 78057 - 78671 (-)
Type: TC
Location: 78057 - 78671 (-)
Gene ID: HRGMv2_4385_5_78
Type: pfam
Location: 79077 - 80516 (+)
Type: pfam
Location: 79077 - 80516 (+)
Gene ID: HRGMv2_4385_5_79
Type: TC
Location: 80587 - 82032 (+)
Type: TC
Location: 80587 - 82032 (+)
Gene ID: HRGMv2_4385_5_80
Type:
Location: 82087 - 83196 (+)
Type:
Location: 82087 - 83196 (+)
Gene ID: HRGMv2_4385_5_81
Type: CAZyme
Location: 83193 - 84134 (+)
Type: CAZyme
Location: 83193 - 84134 (+)
Taxonomic Lineage
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.