Cluster: HRGMv2_4384_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4384
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4384_42 | HRGMv2_4384_42_1 | 746 | 2395 | + | 3.A.1.1.9 |
| NULL(UNKNOWN) | HRGMv2_4384_42 | HRGMv2_4384_42_2 | 2532 | 5372 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4384_42 | HRGMv2_4384_42_3 | 5448 | 6407 | + | 3.A.1.1.29 |
| TC | HRGMv2_4384_42 | HRGMv2_4384_42_4 | 6423 | 7337 | + | 3.A.1.1.29 |
| TF | HRGMv2_4384_42 | HRGMv2_4384_42_5 | 7453 | 8919 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4384_42 | HRGMv2_4384_42_6 | 8940 | 10721 | + | 9.B.33.1.1 |
| pfam | HRGMv2_4384_42 | HRGMv2_4384_42_7 | 11286 | 16589 | + | SLH | SLH | SLH | Big_5 |
| NULL(UNKNOWN) | HRGMv2_4384_42 | HRGMv2_4384_42_8 | 16602 | 19100 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4384_42 | HRGMv2_4384_42_9 | 19115 | 22393 | + | GH148 |
| CAZyme | HRGMv2_4384_42 | HRGMv2_4384_42_10 | 22429 | 24141 | + | GH2 |
| CAZyme | HRGMv2_4384_42 | HRGMv2_4384_42_11 | 24196 | 25806 | + | GH20 |
| CAZyme | HRGMv2_4384_42 | HRGMv2_4384_42_12 | 25988 | 28015 | + | GH3 |
Gene ID: HRGMv2_4384_42_1
Type: TC
Location: 746 - 2395 (+)
Type: TC
Location: 746 - 2395 (+)
Gene ID: HRGMv2_4384_42_2
Type:
Location: 2532 - 5372 (+)
Type:
Location: 2532 - 5372 (+)
Gene ID: HRGMv2_4384_42_3
Type: TC
Location: 5448 - 6407 (+)
Type: TC
Location: 5448 - 6407 (+)
Gene ID: HRGMv2_4384_42_4
Type: TC
Location: 6423 - 7337 (+)
Type: TC
Location: 6423 - 7337 (+)
Gene ID: HRGMv2_4384_42_5
Type: TF
Location: 7453 - 8919 (+)
Type: TF
Location: 7453 - 8919 (+)
Gene ID: HRGMv2_4384_42_6
Type: TC
Location: 8940 - 10721 (+)
Type: TC
Location: 8940 - 10721 (+)
Gene ID: HRGMv2_4384_42_7
Type: pfam
Location: 11286 - 16589 (+)
Type: pfam
Location: 11286 - 16589 (+)
Gene ID: HRGMv2_4384_42_8
Type:
Location: 16602 - 19100 (+)
Type:
Location: 16602 - 19100 (+)
Gene ID: HRGMv2_4384_42_9
Type: CAZyme
Location: 19115 - 22393 (+)
Type: CAZyme
Location: 19115 - 22393 (+)
Gene ID: HRGMv2_4384_42_10
Type: CAZyme
Location: 22429 - 24141 (+)
Type: CAZyme
Location: 22429 - 24141 (+)
Gene ID: HRGMv2_4384_42_11
Type: CAZyme
Location: 24196 - 25806 (+)
Type: CAZyme
Location: 24196 - 25806 (+)
Gene ID: HRGMv2_4384_42_12
Type: CAZyme
Location: 25988 - 28015 (+)
Type: CAZyme
Location: 25988 - 28015 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Monoglobales
Family
Monoglobaceae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.