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Cluster: HRGMv2_4380_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4380_32 HRGMv2_4380_32_9 13978 15552 + 3.A.2.1.5
TC HRGMv2_4380_32 HRGMv2_4380_32_10 15563 16462 + 3.A.2.1.5
TC HRGMv2_4380_32 HRGMv2_4380_32_11 16517 17902 + 3.A.2.1.5
TC HRGMv2_4380_32 HRGMv2_4380_32_12 18112 18525 + 3.A.2.1.5
pfam HRGMv2_4380_32 HRGMv2_4380_32_13 18630 19253 + Hexapep | Mac | Hexapep_2 | Hexapep_2
CAZyme HRGMv2_4380_32 HRGMv2_4380_32_14 19319 24370 - GH3
TF HRGMv2_4380_32 HRGMv2_4380_32_15 24633 25448 + HTH_AraC | HTH_AraC
TC HRGMv2_4380_32 HRGMv2_4380_32_16 25676 27157 + 3.A.1.120.5
Gene ID: HRGMv2_4380_32_9
Type: TC
Location: 13978 - 15552 (+)
Gene ID: HRGMv2_4380_32_10
Type: TC
Location: 15563 - 16462 (+)
Gene ID: HRGMv2_4380_32_11
Type: TC
Location: 16517 - 17902 (+)
Gene ID: HRGMv2_4380_32_12
Type: TC
Location: 18112 - 18525 (+)
Gene ID: HRGMv2_4380_32_13
Type: pfam
Location: 18630 - 19253 (+)
Gene ID: HRGMv2_4380_32_14
Type: CAZyme
Location: 19319 - 24370 (-)
Gene ID: HRGMv2_4380_32_15
Type: TF
Location: 24633 - 25448 (+)
Gene ID: HRGMv2_4380_32_16
Type: TC
Location: 25676 - 27157 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Monoglobales
→
Family
Monoglobaceae
→
Genus
Roslinia
→
Species
Roslinia caecavium

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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