Cluster: HRGMv2_4380_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4380
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_5 | 3319 | 3645 | - | 2.A.78.1.1 |
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_6 | 3645 | 4355 | - | 2.A.78.1.1 |
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_7 | 4542 | 5816 | + | 3.A.1.103.6 |
| CAZyme | HRGMv2_4380_7 | HRGMv2_4380_7_8 | 5828 | 6919 | + | GT2 |
| CAZyme | HRGMv2_4380_7 | HRGMv2_4380_7_9 | 6879 | 7937 | + | GT2 |
| CAZyme | HRGMv2_4380_7 | HRGMv2_4380_7_10 | 8150 | 13393 | - | GH95 |
| TF | HRGMv2_4380_7 | HRGMv2_4380_7_11 | 13559 | 14395 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_12 | 14575 | 15930 | + | 2.A.66.1.33 |
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_13 | 16159 | 17034 | + | 2.A.115.1.5 |
| pfam | HRGMv2_4380_7 | HRGMv2_4380_7_14 | 17092 | 18069 | - | Acetyltransf_9 | SCP2_2 |
| STP | HRGMv2_4380_7 | HRGMv2_4380_7_15 | 18485 | 18739 | + | PTS-HPr |
| TC | HRGMv2_4380_7 | HRGMv2_4380_7_16 | 18974 | 20692 | + | 8.A.7.1.1 |
Gene ID: HRGMv2_4380_7_5
Type: TC
Location: 3319 - 3645 (-)
Type: TC
Location: 3319 - 3645 (-)
Gene ID: HRGMv2_4380_7_6
Type: TC
Location: 3645 - 4355 (-)
Type: TC
Location: 3645 - 4355 (-)
Gene ID: HRGMv2_4380_7_7
Type: TC
Location: 4542 - 5816 (+)
Type: TC
Location: 4542 - 5816 (+)
Gene ID: HRGMv2_4380_7_8
Type: CAZyme
Location: 5828 - 6919 (+)
Type: CAZyme
Location: 5828 - 6919 (+)
Gene ID: HRGMv2_4380_7_9
Type: CAZyme
Location: 6879 - 7937 (+)
Type: CAZyme
Location: 6879 - 7937 (+)
Gene ID: HRGMv2_4380_7_10
Type: CAZyme
Location: 8150 - 13393 (-)
Type: CAZyme
Location: 8150 - 13393 (-)
Gene ID: HRGMv2_4380_7_11
Type: TF
Location: 13559 - 14395 (-)
Type: TF
Location: 13559 - 14395 (-)
Gene ID: HRGMv2_4380_7_12
Type: TC
Location: 14575 - 15930 (+)
Type: TC
Location: 14575 - 15930 (+)
Gene ID: HRGMv2_4380_7_13
Type: TC
Location: 16159 - 17034 (+)
Type: TC
Location: 16159 - 17034 (+)
Gene ID: HRGMv2_4380_7_14
Type: pfam
Location: 17092 - 18069 (-)
Type: pfam
Location: 17092 - 18069 (-)
Gene ID: HRGMv2_4380_7_15
Type: STP
Location: 18485 - 18739 (+)
Type: STP
Location: 18485 - 18739 (+)
Gene ID: HRGMv2_4380_7_16
Type: TC
Location: 18974 - 20692 (+)
Type: TC
Location: 18974 - 20692 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Monoglobales
Family
Monoglobaceae
Genus
Roslinia
Species
Roslinia caecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.