Cluster: HRGMv2_4380_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_4380
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4380_4 | HRGMv2_4380_4_26 | 51517 | 53505 | + | GH36 |
| pfam | HRGMv2_4380_4 | HRGMv2_4380_4_27 | 53812 | 56469 | + | SLH |
| pfam | HRGMv2_4380_4 | HRGMv2_4380_4_28 | 56482 | 62370 | + | SLH | SLH | SLH | aBig_2 | IG_AIR9 |
| CAZyme | HRGMv2_4380_4 | HRGMv2_4380_4_29 | 62459 | 66454 | + | CBM35 | GH36 |
| TF | HRGMv2_4380_4 | HRGMv2_4380_4_30 | 66506 | 68800 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_4380_4 | HRGMv2_4380_4_31 | 69141 | 72374 | + | CBM35 | GH36 |
| TC | HRGMv2_4380_4 | HRGMv2_4380_4_32 | 72429 | 73448 | + | 3.A.1.1.29 |
| TC | HRGMv2_4380_4 | HRGMv2_4380_4_33 | 73481 | 74383 | + | 3.A.1.1.29 |
| TC | HRGMv2_4380_4 | HRGMv2_4380_4_34 | 74439 | 76037 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_4380_4 | HRGMv2_4380_4_35 | 76199 | 78364 | + | GH36 |
| CAZyme | HRGMv2_4380_4 | HRGMv2_4380_4_36 | 78400 | 86586 | + | CBM32 | CBM32 | CBM32 | CBM32 | CBM32 | CBM32 | GH141 |
Gene ID: HRGMv2_4380_4_26
Type: CAZyme
Location: 51517 - 53505 (+)
Type: CAZyme
Location: 51517 - 53505 (+)
Gene ID: HRGMv2_4380_4_27
Type: pfam
Location: 53812 - 56469 (+)
Type: pfam
Location: 53812 - 56469 (+)
Gene ID: HRGMv2_4380_4_28
Type: pfam
Location: 56482 - 62370 (+)
Type: pfam
Location: 56482 - 62370 (+)
Gene ID: HRGMv2_4380_4_29
Type: CAZyme
Location: 62459 - 66454 (+)
Type: CAZyme
Location: 62459 - 66454 (+)
Gene ID: HRGMv2_4380_4_30
Type: TF
Location: 66506 - 68800 (-)
Type: TF
Location: 66506 - 68800 (-)
Gene ID: HRGMv2_4380_4_31
Type: CAZyme
Location: 69141 - 72374 (+)
Type: CAZyme
Location: 69141 - 72374 (+)
Gene ID: HRGMv2_4380_4_32
Type: TC
Location: 72429 - 73448 (+)
Type: TC
Location: 72429 - 73448 (+)
Gene ID: HRGMv2_4380_4_33
Type: TC
Location: 73481 - 74383 (+)
Type: TC
Location: 73481 - 74383 (+)
Gene ID: HRGMv2_4380_4_34
Type: TC
Location: 74439 - 76037 (+)
Type: TC
Location: 74439 - 76037 (+)
Gene ID: HRGMv2_4380_4_35
Type: CAZyme
Location: 76199 - 78364 (+)
Type: CAZyme
Location: 76199 - 78364 (+)
Gene ID: HRGMv2_4380_4_36
Type: CAZyme
Location: 78400 - 86586 (+)
Type: CAZyme
Location: 78400 - 86586 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Monoglobales
Family
Monoglobaceae
Genus
Roslinia
Species
Roslinia caecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.