Cluster: HRGMv2_4380_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: HRGMv2_4380
- CGC Family ID: CGCFAM_00004
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4380_1 | HRGMv2_4380_1_29 | 41311 | 42336 | + | 2.A.120.1.7 |
| CAZyme | HRGMv2_4380_1 | HRGMv2_4380_1_30 | 43095 | 44531 | - | GT5 |
| pfam | HRGMv2_4380_1 | HRGMv2_4380_1_31 | 44738 | 45865 | - | NTP_transferase | Hexapep_GlmU |
| pfam | HRGMv2_4380_1 | HRGMv2_4380_1_32 | 45892 | 47112 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | HRGMv2_4380_1 | HRGMv2_4380_1_33 | 47229 | 49391 | - | GH13_9 |
Gene ID: HRGMv2_4380_1_29
Type: TC
Location: 41311 - 42336 (+)
Type: TC
Location: 41311 - 42336 (+)
Gene ID: HRGMv2_4380_1_30
Type: CAZyme
Location: 43095 - 44531 (-)
Type: CAZyme
Location: 43095 - 44531 (-)
Gene ID: HRGMv2_4380_1_31
Type: pfam
Location: 44738 - 45865 (-)
Type: pfam
Location: 44738 - 45865 (-)
Gene ID: HRGMv2_4380_1_32
Type: pfam
Location: 45892 - 47112 (-)
Type: pfam
Location: 45892 - 47112 (-)
Gene ID: HRGMv2_4380_1_33
Type: CAZyme
Location: 47229 - 49391 (-)
Type: CAZyme
Location: 47229 - 49391 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Monoglobales
Family
Monoglobaceae
Genus
Roslinia
Species
Roslinia caecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.