Cluster: HRGMv2_4374_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4374
- CGC Family ID: CGCFAM_06141
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4374_20 | HRGMv2_4374_20_24 | 22885 | 24036 | + | 3.B.1.1.5 |
| NULL(UNKNOWN) | HRGMv2_4374_20 | HRGMv2_4374_20_25 | 24080 | 24211 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4374_20 | HRGMv2_4374_20_26 | 24337 | 25383 | + | GH179 |
| TC | HRGMv2_4374_20 | HRGMv2_4374_20_27 | 25607 | 27100 | + | 3.A.1.121.3 |
| CAZyme | HRGMv2_4374_20 | HRGMv2_4374_20_28 | 27208 | 28410 | + | CE4 |
| CAZyme | HRGMv2_4374_20 | HRGMv2_4374_20_29 | 28530 | 32756 | - | CBM32 | PL35 |
Gene ID: HRGMv2_4374_20_24
Type: TC
Location: 22885 - 24036 (+)
Type: TC
Location: 22885 - 24036 (+)
Gene ID: HRGMv2_4374_20_25
Type:
Location: 24080 - 24211 (+)
Type:
Location: 24080 - 24211 (+)
Gene ID: HRGMv2_4374_20_26
Type: CAZyme
Location: 24337 - 25383 (+)
Type: CAZyme
Location: 24337 - 25383 (+)
Gene ID: HRGMv2_4374_20_27
Type: TC
Location: 25607 - 27100 (+)
Type: TC
Location: 25607 - 27100 (+)
Gene ID: HRGMv2_4374_20_28
Type: CAZyme
Location: 27208 - 28410 (+)
Type: CAZyme
Location: 27208 - 28410 (+)
Gene ID: HRGMv2_4374_20_29
Type: CAZyme
Location: 28530 - 32756 (-)
Type: CAZyme
Location: 28530 - 32756 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UMGS1253
Genus
Aphodoplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.