Cluster: HRGMv2_4374_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4374
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4374_12 | HRGMv2_4374_12_24 | 23548 | 24105 | - | 2.A.87.1.3 |
| pfam | HRGMv2_4374_12 | HRGMv2_4374_12_25 | 24400 | 24936 | - | RibD_C |
| pfam | HRGMv2_4374_12 | HRGMv2_4374_12_26 | 24939 | 25772 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_4374_12 | HRGMv2_4374_12_27 | 25840 | 27153 | - | GH39 |
| pfam | HRGMv2_4374_12 | HRGMv2_4374_12_28 | 27312 | 28052 | + | ThiF |
| NULL(UNKNOWN) | HRGMv2_4374_12 | HRGMv2_4374_12_29 | 28069 | 28278 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4374_12 | HRGMv2_4374_12_30 | 28313 | 29128 | - | 1.C.109.1.5 |
Gene ID: HRGMv2_4374_12_24
Type: TC
Location: 23548 - 24105 (-)
Type: TC
Location: 23548 - 24105 (-)
Gene ID: HRGMv2_4374_12_25
Type: pfam
Location: 24400 - 24936 (-)
Type: pfam
Location: 24400 - 24936 (-)
Gene ID: HRGMv2_4374_12_26
Type: pfam
Location: 24939 - 25772 (-)
Type: pfam
Location: 24939 - 25772 (-)
Gene ID: HRGMv2_4374_12_27
Type: CAZyme
Location: 25840 - 27153 (-)
Type: CAZyme
Location: 25840 - 27153 (-)
Gene ID: HRGMv2_4374_12_28
Type: pfam
Location: 27312 - 28052 (+)
Type: pfam
Location: 27312 - 28052 (+)
Gene ID: HRGMv2_4374_12_29
Type:
Location: 28069 - 28278 (-)
Type:
Location: 28069 - 28278 (-)
Gene ID: HRGMv2_4374_12_30
Type: TC
Location: 28313 - 29128 (-)
Type: TC
Location: 28313 - 29128 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UMGS1253
Genus
Aphodoplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.