Cluster: HRGMv2_4374_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4374
- CGC Family ID: CGCFAM_00060
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4374_63 | HRGMv2_4374_63_9 | 6769 | 7572 | + | CE4 |
| TC | HRGMv2_4374_63 | HRGMv2_4374_63_10 | 7725 | 9305 | + | 3.A.1.1.10 |
| pfam | HRGMv2_4374_63 | HRGMv2_4374_63_11 | 9370 | 9891 | - | GrpB |
| pfam | HRGMv2_4374_63 | HRGMv2_4374_63_12 | 9911 | 10924 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | GDP_Man_Dehyd |
| CAZyme | HRGMv2_4374_63 | HRGMv2_4374_63_13 | 11088 | 12638 | - | CBM32 |
Gene ID: HRGMv2_4374_63_9
Type: CAZyme
Location: 6769 - 7572 (+)
Type: CAZyme
Location: 6769 - 7572 (+)
Gene ID: HRGMv2_4374_63_10
Type: TC
Location: 7725 - 9305 (+)
Type: TC
Location: 7725 - 9305 (+)
Gene ID: HRGMv2_4374_63_11
Type: pfam
Location: 9370 - 9891 (-)
Type: pfam
Location: 9370 - 9891 (-)
Gene ID: HRGMv2_4374_63_12
Type: pfam
Location: 9911 - 10924 (-)
Type: pfam
Location: 9911 - 10924 (-)
Gene ID: HRGMv2_4374_63_13
Type: CAZyme
Location: 11088 - 12638 (-)
Type: CAZyme
Location: 11088 - 12638 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UMGS1253
Genus
Aphodoplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.