Cluster: HRGMv2_4374_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4374
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4374_25 | HRGMv2_4374_25_3 | 2157 | 8735 | - | PL8 |
| TF | HRGMv2_4374_25 | HRGMv2_4374_25_4 | 8904 | 9806 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_4374_25 | HRGMv2_4374_25_5 | 9892 | 10809 | - | SUFBD_core |
| TC | HRGMv2_4374_25 | HRGMv2_4374_25_6 | 10802 | 11533 | - | 3.A.1.14.3 |
| pfam | HRGMv2_4374_25 | HRGMv2_4374_25_7 | 11968 | 16479 | - | SLH | SLH | SLH | Flg_new_2 | Pectate_lyase_5 |
| TC | HRGMv2_4374_25 | HRGMv2_4374_25_8 | 16824 | 18377 | - | 2.A.21.2.2 |
Gene ID: HRGMv2_4374_25_3
Type: CAZyme
Location: 2157 - 8735 (-)
Type: CAZyme
Location: 2157 - 8735 (-)
Gene ID: HRGMv2_4374_25_4
Type: TF
Location: 8904 - 9806 (-)
Type: TF
Location: 8904 - 9806 (-)
Gene ID: HRGMv2_4374_25_5
Type: pfam
Location: 9892 - 10809 (-)
Type: pfam
Location: 9892 - 10809 (-)
Gene ID: HRGMv2_4374_25_6
Type: TC
Location: 10802 - 11533 (-)
Type: TC
Location: 10802 - 11533 (-)
Gene ID: HRGMv2_4374_25_7
Type: pfam
Location: 11968 - 16479 (-)
Type: pfam
Location: 11968 - 16479 (-)
Gene ID: HRGMv2_4374_25_8
Type: TC
Location: 16824 - 18377 (-)
Type: TC
Location: 16824 - 18377 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UMGS1253
Genus
Aphodoplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.