Cluster: HRGMv2_4373_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4373
- CGC Family ID: CGCFAM_05156
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4373_19 | HRGMv2_4373_19_2 | 1292 | 3595 | - | GH2 |
| TF | HRGMv2_4373_19 | HRGMv2_4373_19_3 | 3795 | 4682 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_4373_19 | HRGMv2_4373_19_4 | 4846 | 5286 | + | NfeD |
| TC | HRGMv2_4373_19 | HRGMv2_4373_19_5 | 5360 | 6256 | + | 8.A.21.2.2 |
Gene ID: HRGMv2_4373_19_2
Type: CAZyme
Location: 1292 - 3595 (-)
Type: CAZyme
Location: 1292 - 3595 (-)
Gene ID: HRGMv2_4373_19_3
Type: TF
Location: 3795 - 4682 (+)
Type: TF
Location: 3795 - 4682 (+)
Gene ID: HRGMv2_4373_19_4
Type: pfam
Location: 4846 - 5286 (+)
Type: pfam
Location: 4846 - 5286 (+)
Gene ID: HRGMv2_4373_19_5
Type: TC
Location: 5360 - 6256 (+)
Type: TC
Location: 5360 - 6256 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
UBA1381
Family
UBA1381
Genus
CAKSQL01
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.