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Cluster: HRGMv2_4372_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4372_4 HRGMv2_4372_4_23 19977 21149 - GH179
TF HRGMv2_4372_4 HRGMv2_4372_4_24 21287 22156 + HTH_AraC | HTH_AraC
STP HRGMv2_4372_4 HRGMv2_4372_4_25 22198 22656 - CBS | CBS
TC HRGMv2_4372_4 HRGMv2_4372_4_26 22847 23545 - 3.A.1.4.10
TC HRGMv2_4372_4 HRGMv2_4372_4_27 23545 24381 - 3.A.1.4.10
TC HRGMv2_4372_4 HRGMv2_4372_4_28 24383 25453 - 3.A.1.4.8
TC HRGMv2_4372_4 HRGMv2_4372_4_29 25462 26343 - 3.A.1.4.10
TC HRGMv2_4372_4 HRGMv2_4372_4_30 26584 27789 - 3.A.1.4.10
STP HRGMv2_4372_4 HRGMv2_4372_4_31 28398 29966 - HD
NULL(UNKNOWN) HRGMv2_4372_4 HRGMv2_4372_4_32 30713 30877 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4372_4 HRGMv2_4372_4_33 30936 32948 - 3.A.3.6.10
Gene ID: HRGMv2_4372_4_23
Type: CAZyme
Location: 19977 - 21149 (-)
Gene ID: HRGMv2_4372_4_24
Type: TF
Location: 21287 - 22156 (+)
Gene ID: HRGMv2_4372_4_25
Type: STP
Location: 22198 - 22656 (-)
Gene ID: HRGMv2_4372_4_26
Type: TC
Location: 22847 - 23545 (-)
Gene ID: HRGMv2_4372_4_27
Type: TC
Location: 23545 - 24381 (-)
Gene ID: HRGMv2_4372_4_28
Type: TC
Location: 24383 - 25453 (-)
Gene ID: HRGMv2_4372_4_29
Type: TC
Location: 25462 - 26343 (-)
Gene ID: HRGMv2_4372_4_30
Type: TC
Location: 26584 - 27789 (-)
Gene ID: HRGMv2_4372_4_31
Type: STP
Location: 28398 - 29966 (-)
Gene ID: HRGMv2_4372_4_32
Type:
Location: 30713 - 30877 (-)
Gene ID: HRGMv2_4372_4_33
Type: TC
Location: 30936 - 32948 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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