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Cluster: HRGMv2_4372_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4372_35 HRGMv2_4372_35_15 11879 12790 - 3.A.1.3.27
TC HRGMv2_4372_35 HRGMv2_4372_35_16 12946 13674 - 3.A.1.3.25
TC HRGMv2_4372_35 HRGMv2_4372_35_17 13686 14375 - 3.A.1.3.15
CAZyme HRGMv2_4372_35 HRGMv2_4372_35_18 14713 16947 + GT4
TC HRGMv2_4372_35 HRGMv2_4372_35_19 16940 18469 + 2.A.66.4.7
TC HRGMv2_4372_35 HRGMv2_4372_35_20 18617 20494 + 9.B.67.1.1
CAZyme HRGMv2_4372_35 HRGMv2_4372_35_21 20494 21600 + GT4
pfam HRGMv2_4372_35 HRGMv2_4372_35_22 21597 22061 + DUF4330
pfam HRGMv2_4372_35 HRGMv2_4372_35_23 22076 22564 + DUF4330
TC HRGMv2_4372_35 HRGMv2_4372_35_24 22743 23306 - 9.B.156.3.1
Gene ID: HRGMv2_4372_35_15
Type: TC
Location: 11879 - 12790 (-)
Gene ID: HRGMv2_4372_35_16
Type: TC
Location: 12946 - 13674 (-)
Gene ID: HRGMv2_4372_35_17
Type: TC
Location: 13686 - 14375 (-)
Gene ID: HRGMv2_4372_35_18
Type: CAZyme
Location: 14713 - 16947 (+)
Gene ID: HRGMv2_4372_35_19
Type: TC
Location: 16940 - 18469 (+)
Gene ID: HRGMv2_4372_35_20
Type: TC
Location: 18617 - 20494 (+)
Gene ID: HRGMv2_4372_35_21
Type: CAZyme
Location: 20494 - 21600 (+)
Gene ID: HRGMv2_4372_35_22
Type: pfam
Location: 21597 - 22061 (+)
Gene ID: HRGMv2_4372_35_23
Type: pfam
Location: 22076 - 22564 (+)
Gene ID: HRGMv2_4372_35_24
Type: TC
Location: 22743 - 23306 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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