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Cluster: HRGMv2_4372_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_6 4271 6025 - GH36
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_7 6064 8430 - GH31_15
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_8 8447 9712 - GH1
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_9 9781 10872 - GH88
NULL(UNKNOWN) HRGMv2_4372_30 HRGMv2_4372_30_10 11137 14385 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4372_30 HRGMv2_4372_30_11 14405 17122 - Big_5 | Big_7
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_12 17142 20021 - PL35
CAZyme HRGMv2_4372_30 HRGMv2_4372_30_13 20033 24319 - PL35
pfam HRGMv2_4372_30 HRGMv2_4372_30_14 24319 26985 - SLH | SLH
pfam HRGMv2_4372_30 HRGMv2_4372_30_15 27015 28682 - SLH | SLH | SLH
TC HRGMv2_4372_30 HRGMv2_4372_30_16 28775 29659 - 3.A.1.1.29
TC HRGMv2_4372_30 HRGMv2_4372_30_17 29673 30623 - 3.A.1.1.10
Gene ID: HRGMv2_4372_30_6
Type: CAZyme
Location: 4271 - 6025 (-)
Gene ID: HRGMv2_4372_30_7
Type: CAZyme
Location: 6064 - 8430 (-)
Gene ID: HRGMv2_4372_30_8
Type: CAZyme
Location: 8447 - 9712 (-)
Gene ID: HRGMv2_4372_30_9
Type: CAZyme
Location: 9781 - 10872 (-)
Gene ID: HRGMv2_4372_30_10
Type:
Location: 11137 - 14385 (-)
Gene ID: HRGMv2_4372_30_11
Type: pfam
Location: 14405 - 17122 (-)
Gene ID: HRGMv2_4372_30_12
Type: CAZyme
Location: 17142 - 20021 (-)
Gene ID: HRGMv2_4372_30_13
Type: CAZyme
Location: 20033 - 24319 (-)
Gene ID: HRGMv2_4372_30_14
Type: pfam
Location: 24319 - 26985 (-)
Gene ID: HRGMv2_4372_30_15
Type: pfam
Location: 27015 - 28682 (-)
Gene ID: HRGMv2_4372_30_16
Type: TC
Location: 28775 - 29659 (-)
Gene ID: HRGMv2_4372_30_17
Type: TC
Location: 29673 - 30623 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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