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Cluster: HRGMv2_4372_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4372_22 HRGMv2_4372_22_12 21334 22401 + GH179
pfam HRGMv2_4372_22 HRGMv2_4372_22_13 22432 24693 + Pect-lyase_RHGA_epim | Beta_helix
pfam HRGMv2_4372_22 HRGMv2_4372_22_14 24695 26710 + Melibiase | Glyco_hydro_97
CAZyme HRGMv2_4372_22 HRGMv2_4372_22_15 26719 28008 + GH28
pfam HRGMv2_4372_22 HRGMv2_4372_22_16 28037 28711 + ThuA
peptidase HRGMv2_4372_22 HRGMv2_4372_22_17 28733 29527 + S09.UPW
TC HRGMv2_4372_22 HRGMv2_4372_22_18 29593 31335 - 8.A.59.2.1
TF HRGMv2_4372_22 HRGMv2_4372_22_19 31298 32503 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_4372_22 HRGMv2_4372_22_20 32612 32866 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4372_22 HRGMv2_4372_22_21 33300 34007 + 9.B.18.1.2
CAZyme HRGMv2_4372_22 HRGMv2_4372_22_22 34004 35146 + GT4
Gene ID: HRGMv2_4372_22_12
Type: CAZyme
Location: 21334 - 22401 (+)
Gene ID: HRGMv2_4372_22_13
Type: pfam
Location: 22432 - 24693 (+)
Gene ID: HRGMv2_4372_22_14
Type: pfam
Location: 24695 - 26710 (+)
Gene ID: HRGMv2_4372_22_15
Type: CAZyme
Location: 26719 - 28008 (+)
Gene ID: HRGMv2_4372_22_16
Type: pfam
Location: 28037 - 28711 (+)
Gene ID: HRGMv2_4372_22_17
Type: peptidase
Location: 28733 - 29527 (+)
Gene ID: HRGMv2_4372_22_18
Type: TC
Location: 29593 - 31335 (-)
Gene ID: HRGMv2_4372_22_19
Type: TF
Location: 31298 - 32503 (-)
Gene ID: HRGMv2_4372_22_20
Type:
Location: 32612 - 32866 (+)
Gene ID: HRGMv2_4372_22_21
Type: TC
Location: 33300 - 34007 (+)
Gene ID: HRGMv2_4372_22_22
Type: CAZyme
Location: 34004 - 35146 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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