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Cluster: HRGMv2_4372_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4372_18 HRGMv2_4372_18_3 2001 3239 - GH29
NULL(UNKNOWN) HRGMv2_4372_18 HRGMv2_4372_18_4 3327 6053 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4372_18 HRGMv2_4372_18_5 6076 7773 - SLH | SLH | SLH
CAZyme HRGMv2_4372_18 HRGMv2_4372_18_6 7791 10277 - CE17
CAZyme HRGMv2_4372_18 HRGMv2_4372_18_7 10444 14100 - GH141
pfam HRGMv2_4372_18 HRGMv2_4372_18_8 14135 18373 - CBM_4_9 | CBM_4_9
NULL(UNKNOWN) HRGMv2_4372_18 HRGMv2_4372_18_9 18573 21110 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4372_18 HRGMv2_4372_18_10 21153 24704 - GH141
STP HRGMv2_4372_18 HRGMv2_4372_18_11 24723 26186 - SBP_bac_1
TC HRGMv2_4372_18 HRGMv2_4372_18_12 26220 27092 - 3.A.1.1.29
TC HRGMv2_4372_18 HRGMv2_4372_18_13 27123 28067 - 3.A.1.1.10
Gene ID: HRGMv2_4372_18_3
Type: CAZyme
Location: 2001 - 3239 (-)
Gene ID: HRGMv2_4372_18_4
Type:
Location: 3327 - 6053 (-)
Gene ID: HRGMv2_4372_18_5
Type: pfam
Location: 6076 - 7773 (-)
Gene ID: HRGMv2_4372_18_6
Type: CAZyme
Location: 7791 - 10277 (-)
Gene ID: HRGMv2_4372_18_7
Type: CAZyme
Location: 10444 - 14100 (-)
Gene ID: HRGMv2_4372_18_8
Type: pfam
Location: 14135 - 18373 (-)
Gene ID: HRGMv2_4372_18_9
Type:
Location: 18573 - 21110 (-)
Gene ID: HRGMv2_4372_18_10
Type: CAZyme
Location: 21153 - 24704 (-)
Gene ID: HRGMv2_4372_18_11
Type: STP
Location: 24723 - 26186 (-)
Gene ID: HRGMv2_4372_18_12
Type: TC
Location: 26220 - 27092 (-)
Gene ID: HRGMv2_4372_18_13
Type: TC
Location: 27123 - 28067 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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