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Cluster: HRGMv2_4372_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4372_16 HRGMv2_4372_16_3 1785 3494 + 8.A.59.2.1
peptidase HRGMv2_4372_16 HRGMv2_4372_16_4 3546 4949 - S12.UPW
CAZyme HRGMv2_4372_16 HRGMv2_4372_16_5 4973 6883 - GH146
CAZyme HRGMv2_4372_16 HRGMv2_4372_16_6 6943 11205 - CE17
pfam HRGMv2_4372_16 HRGMv2_4372_16_7 11261 13483 - Polysacc_deac_1
CAZyme HRGMv2_4372_16 HRGMv2_4372_16_8 13516 17205 - GH141
pfam HRGMv2_4372_16 HRGMv2_4372_16_9 17229 20009 - SLH
pfam HRGMv2_4372_16 HRGMv2_4372_16_10 20006 23095 - SLH | SLH | SLH
CAZyme HRGMv2_4372_16 HRGMv2_4372_16_11 23138 26713 - GH141
STP HRGMv2_4372_16 HRGMv2_4372_16_12 26735 28168 - SBP_bac_1
TC HRGMv2_4372_16 HRGMv2_4372_16_13 28202 29074 - 3.A.1.1.29
TC HRGMv2_4372_16 HRGMv2_4372_16_14 29123 30067 - 3.A.1.1.29
Gene ID: HRGMv2_4372_16_3
Type: TC
Location: 1785 - 3494 (+)
Gene ID: HRGMv2_4372_16_4
Type: peptidase
Location: 3546 - 4949 (-)
Gene ID: HRGMv2_4372_16_5
Type: CAZyme
Location: 4973 - 6883 (-)
Gene ID: HRGMv2_4372_16_6
Type: CAZyme
Location: 6943 - 11205 (-)
Gene ID: HRGMv2_4372_16_7
Type: pfam
Location: 11261 - 13483 (-)
Gene ID: HRGMv2_4372_16_8
Type: CAZyme
Location: 13516 - 17205 (-)
Gene ID: HRGMv2_4372_16_9
Type: pfam
Location: 17229 - 20009 (-)
Gene ID: HRGMv2_4372_16_10
Type: pfam
Location: 20006 - 23095 (-)
Gene ID: HRGMv2_4372_16_11
Type: CAZyme
Location: 23138 - 26713 (-)
Gene ID: HRGMv2_4372_16_12
Type: STP
Location: 26735 - 28168 (-)
Gene ID: HRGMv2_4372_16_13
Type: TC
Location: 28202 - 29074 (-)
Gene ID: HRGMv2_4372_16_14
Type: TC
Location: 29123 - 30067 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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