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Cluster: HRGMv2_4358_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4358_1 HRGMv2_4358_1_273 273244 275589 - GT51
pfam HRGMv2_4358_1 HRGMv2_4358_1_274 275835 276728 + AP_endonuc_2
TC HRGMv2_4358_1 HRGMv2_4358_1_275 277144 278721 - 2.A.55.2.6
pfam HRGMv2_4358_1 HRGMv2_4358_1_276 278987 279211 + UPF0154
TC HRGMv2_4358_1 HRGMv2_4358_1_277 279341 281092 + 3.A.1.106.8
TC HRGMv2_4358_1 HRGMv2_4358_1_278 281092 282870 + 3.A.1.106.8
TF HRGMv2_4358_1 HRGMv2_4358_1_279 282971 283888 - HTH_6
CAZyme HRGMv2_4358_1 HRGMv2_4358_1_280 284134 285522 + GH4
pfam HRGMv2_4358_1 HRGMv2_4358_1_281 285534 286361 + Hydrolase_3
CAZyme HRGMv2_4358_1 HRGMv2_4358_1_282 286417 287850 + GH1
Gene ID: HRGMv2_4358_1_273
Type: CAZyme
Location: 273244 - 275589 (-)
Gene ID: HRGMv2_4358_1_274
Type: pfam
Location: 275835 - 276728 (+)
Gene ID: HRGMv2_4358_1_275
Type: TC
Location: 277144 - 278721 (-)
Gene ID: HRGMv2_4358_1_276
Type: pfam
Location: 278987 - 279211 (+)
Gene ID: HRGMv2_4358_1_277
Type: TC
Location: 279341 - 281092 (+)
Gene ID: HRGMv2_4358_1_278
Type: TC
Location: 281092 - 282870 (+)
Gene ID: HRGMv2_4358_1_279
Type: TF
Location: 282971 - 283888 (-)
Gene ID: HRGMv2_4358_1_280
Type: CAZyme
Location: 284134 - 285522 (+)
Gene ID: HRGMv2_4358_1_281
Type: pfam
Location: 285534 - 286361 (+)
Gene ID: HRGMv2_4358_1_282
Type: CAZyme
Location: 286417 - 287850 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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