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Cluster: HRGMv2_4358_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4358_19 HRGMv2_4358_19_14 18018 19664 + 2.A.66.2.14
pfam HRGMv2_4358_19 HRGMv2_4358_19_15 19745 20464 + PseudoU_synth_2 | S4
TC HRGMv2_4358_19 HRGMv2_4358_19_16 20719 21666 + 3.A.1.1.10
TC HRGMv2_4358_19 HRGMv2_4358_19_17 21679 22599 + 3.A.1.1.29
STP HRGMv2_4358_19 HRGMv2_4358_19_18 22632 24089 + SBP_bac_1
TC HRGMv2_4358_19 HRGMv2_4358_19_19 24175 24789 + 9.B.28.1.11
TC HRGMv2_4358_19 HRGMv2_4358_19_20 24782 26524 + 8.A.59.2.1
TF HRGMv2_4358_19 HRGMv2_4358_19_21 26517 27959 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4358_19 HRGMv2_4358_19_22 28163 30304 - GH92
TF HRGMv2_4358_19 HRGMv2_4358_19_23 30285 31352 - GntR
CAZyme HRGMv2_4358_19 HRGMv2_4358_19_24 31504 32793 + GH125
CAZyme HRGMv2_4358_19 HRGMv2_4358_19_25 32804 35491 + GH38
pfam HRGMv2_4358_19 HRGMv2_4358_19_26 35492 36355 + ROK
pfam HRGMv2_4358_19 HRGMv2_4358_19_27 36557 37411 - PseudoU_synth_2
CAZyme HRGMv2_4358_19 HRGMv2_4358_19_28 37608 39779 + GT51
pfam HRGMv2_4358_19 HRGMv2_4358_19_29 39845 40186 + Com_YlbF
TC HRGMv2_4358_19 HRGMv2_4358_19_30 40381 40668 + 2.A.2.3.5
TC HRGMv2_4358_19 HRGMv2_4358_19_31 41100 41795 + 2.A.2.3.9
Gene ID: HRGMv2_4358_19_14
Type: TC
Location: 18018 - 19664 (+)
Gene ID: HRGMv2_4358_19_15
Type: pfam
Location: 19745 - 20464 (+)
Gene ID: HRGMv2_4358_19_16
Type: TC
Location: 20719 - 21666 (+)
Gene ID: HRGMv2_4358_19_17
Type: TC
Location: 21679 - 22599 (+)
Gene ID: HRGMv2_4358_19_18
Type: STP
Location: 22632 - 24089 (+)
Gene ID: HRGMv2_4358_19_19
Type: TC
Location: 24175 - 24789 (+)
Gene ID: HRGMv2_4358_19_20
Type: TC
Location: 24782 - 26524 (+)
Gene ID: HRGMv2_4358_19_21
Type: TF
Location: 26517 - 27959 (+)
Gene ID: HRGMv2_4358_19_22
Type: CAZyme
Location: 28163 - 30304 (-)
Gene ID: HRGMv2_4358_19_23
Type: TF
Location: 30285 - 31352 (-)
Gene ID: HRGMv2_4358_19_24
Type: CAZyme
Location: 31504 - 32793 (+)
Gene ID: HRGMv2_4358_19_25
Type: CAZyme
Location: 32804 - 35491 (+)
Gene ID: HRGMv2_4358_19_26
Type: pfam
Location: 35492 - 36355 (+)
Gene ID: HRGMv2_4358_19_27
Type: pfam
Location: 36557 - 37411 (-)
Gene ID: HRGMv2_4358_19_28
Type: CAZyme
Location: 37608 - 39779 (+)
Gene ID: HRGMv2_4358_19_29
Type: pfam
Location: 39845 - 40186 (+)
Gene ID: HRGMv2_4358_19_30
Type: TC
Location: 40381 - 40668 (+)
Gene ID: HRGMv2_4358_19_31
Type: TC
Location: 41100 - 41795 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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