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Cluster: HRGMv2_4358_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4358_16 HRGMv2_4358_16_1 205 1314 - 3.A.1.1.20
pfam HRGMv2_4358_16 HRGMv2_4358_16_2 1519 1950 + MGS
TC HRGMv2_4358_16 HRGMv2_4358_16_3 2149 2784 + 3.A.1.26.10
TC HRGMv2_4358_16 HRGMv2_4358_16_4 2832 4595 - 3.A.1.135.5
TC HRGMv2_4358_16 HRGMv2_4358_16_5 4597 6312 - 3.A.1.135.5
pfam HRGMv2_4358_16 HRGMv2_4358_16_6 6487 7323 + ABC_trans_CmpB
pfam HRGMv2_4358_16 HRGMv2_4358_16_7 7511 8677 + 3D | CC_PcsB
CAZyme HRGMv2_4358_16 HRGMv2_4358_16_8 8743 9387 - AA10
TF HRGMv2_4358_16 HRGMv2_4358_16_9 9512 10354 - HTH_3
CAZyme HRGMv2_4358_16 HRGMv2_4358_16_10 10575 12311 + GH18
pfam HRGMv2_4358_16 HRGMv2_4358_16_11 12768 13892 + Glyphos_transf
CAZyme HRGMv2_4358_16 HRGMv2_4358_16_12 13867 14673 + GT26
Gene ID: HRGMv2_4358_16_1
Type: TC
Location: 205 - 1314 (-)
Gene ID: HRGMv2_4358_16_2
Type: pfam
Location: 1519 - 1950 (+)
Gene ID: HRGMv2_4358_16_3
Type: TC
Location: 2149 - 2784 (+)
Gene ID: HRGMv2_4358_16_4
Type: TC
Location: 2832 - 4595 (-)
Gene ID: HRGMv2_4358_16_5
Type: TC
Location: 4597 - 6312 (-)
Gene ID: HRGMv2_4358_16_6
Type: pfam
Location: 6487 - 7323 (+)
Gene ID: HRGMv2_4358_16_7
Type: pfam
Location: 7511 - 8677 (+)
Gene ID: HRGMv2_4358_16_8
Type: CAZyme
Location: 8743 - 9387 (-)
Gene ID: HRGMv2_4358_16_9
Type: TF
Location: 9512 - 10354 (-)
Gene ID: HRGMv2_4358_16_10
Type: CAZyme
Location: 10575 - 12311 (+)
Gene ID: HRGMv2_4358_16_11
Type: pfam
Location: 12768 - 13892 (+)
Gene ID: HRGMv2_4358_16_12
Type: CAZyme
Location: 13867 - 14673 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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