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Cluster: HRGMv2_4358_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4358_4 HRGMv2_4358_4_159 162016 163407 + GH16_24
TF HRGMv2_4358_4 HRGMv2_4358_4_160 163638 164354 - HTH_6
pfam HRGMv2_4358_4 HRGMv2_4358_4_161 164513 165325 + YdjC
TC HRGMv2_4358_4 HRGMv2_4358_4_162 165372 166937 + 4.A.1.1.8
CAZyme HRGMv2_4358_4 HRGMv2_4358_4_163 166959 168284 + GH4
pfam HRGMv2_4358_4 HRGMv2_4358_4_164 168548 169387 + PRD | PRD | CAT_RBD
TC HRGMv2_4358_4 HRGMv2_4358_4_165 169407 171374 + 4.A.1.1.2
TF HRGMv2_4358_4 HRGMv2_4358_4_166 171892 172599 + GntR
pfam HRGMv2_4358_4 HRGMv2_4358_4_167 172963 174162 - MR_MLE_N | MR_MLE_C
TC HRGMv2_4358_4 HRGMv2_4358_4_168 174412 176235 + 4.A.1.2.11
Gene ID: HRGMv2_4358_4_159
Type: CAZyme
Location: 162016 - 163407 (+)
Gene ID: HRGMv2_4358_4_160
Type: TF
Location: 163638 - 164354 (-)
Gene ID: HRGMv2_4358_4_161
Type: pfam
Location: 164513 - 165325 (+)
Gene ID: HRGMv2_4358_4_162
Type: TC
Location: 165372 - 166937 (+)
Gene ID: HRGMv2_4358_4_163
Type: CAZyme
Location: 166959 - 168284 (+)
Gene ID: HRGMv2_4358_4_164
Type: pfam
Location: 168548 - 169387 (+)
Gene ID: HRGMv2_4358_4_165
Type: TC
Location: 169407 - 171374 (+)
Gene ID: HRGMv2_4358_4_166
Type: TF
Location: 171892 - 172599 (+)
Gene ID: HRGMv2_4358_4_167
Type: pfam
Location: 172963 - 174162 (-)
Gene ID: HRGMv2_4358_4_168
Type: TC
Location: 174412 - 176235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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