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Cluster: HRGMv2_4358_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4358_1 HRGMv2_4358_1_10 6760 8133 - 2.A.3.1.15
TC HRGMv2_4358_1 HRGMv2_4358_1_11 8384 9127 + 3.A.1.15.2
TC HRGMv2_4358_1 HRGMv2_4358_1_12 9124 9978 + 3.A.1.15.14
TC HRGMv2_4358_1 HRGMv2_4358_1_13 9965 10897 + 3.A.1.15.2
NULL(UNKNOWN) HRGMv2_4358_1 HRGMv2_4358_1_14 11157 11906 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4358_1 HRGMv2_4358_1_15 11986 13149 + HEAT_PBS | QueG_DUF1730 | Fer4_16 | HEAT_2
CAZyme HRGMv2_4358_1 HRGMv2_4358_1_16 13552 14157 + CBM50
pfam HRGMv2_4358_1 HRGMv2_4358_1_17 14376 16025 + PEPCK_ATP
pfam HRGMv2_4358_1 HRGMv2_4358_1_18 16209 17321 - DAO
TC HRGMv2_4358_1 HRGMv2_4358_1_19 17399 18766 - 2.A.1.3.30
Gene ID: HRGMv2_4358_1_10
Type: TC
Location: 6760 - 8133 (-)
Gene ID: HRGMv2_4358_1_11
Type: TC
Location: 8384 - 9127 (+)
Gene ID: HRGMv2_4358_1_12
Type: TC
Location: 9124 - 9978 (+)
Gene ID: HRGMv2_4358_1_13
Type: TC
Location: 9965 - 10897 (+)
Gene ID: HRGMv2_4358_1_14
Type:
Location: 11157 - 11906 (+)
Gene ID: HRGMv2_4358_1_15
Type: pfam
Location: 11986 - 13149 (+)
Gene ID: HRGMv2_4358_1_16
Type: CAZyme
Location: 13552 - 14157 (+)
Gene ID: HRGMv2_4358_1_17
Type: pfam
Location: 14376 - 16025 (+)
Gene ID: HRGMv2_4358_1_18
Type: pfam
Location: 16209 - 17321 (-)
Gene ID: HRGMv2_4358_1_19
Type: TC
Location: 17399 - 18766 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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