Cluster: HRGMv2_4357_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4357
- CGC Family ID: CGCFAM_05397
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4357_27 | HRGMv2_4357_27_1 | 3 | 1301 | + | 3.A.3.5.2 |
| TC | HRGMv2_4357_27 | HRGMv2_4357_27_2 | 1554 | 2273 | + | 1.A.8.13.3 |
| pfam | HRGMv2_4357_27 | HRGMv2_4357_27_3 | 2321 | 3241 | - | PseudoU_synth_2 |
| TF | HRGMv2_4357_27 | HRGMv2_4357_27_4 | 3281 | 3751 | - | MerR |
| CAZyme | HRGMv2_4357_27 | HRGMv2_4357_27_5 | 3790 | 4857 | - | GT4 |
Gene ID: HRGMv2_4357_27_1
Type: TC
Location: 3 - 1301 (+)
Type: TC
Location: 3 - 1301 (+)
Gene ID: HRGMv2_4357_27_2
Type: TC
Location: 1554 - 2273 (+)
Type: TC
Location: 1554 - 2273 (+)
Gene ID: HRGMv2_4357_27_3
Type: pfam
Location: 2321 - 3241 (-)
Type: pfam
Location: 2321 - 3241 (-)
Gene ID: HRGMv2_4357_27_4
Type: TF
Location: 3281 - 3751 (-)
Type: TF
Location: 3281 - 3751 (-)
Gene ID: HRGMv2_4357_27_5
Type: CAZyme
Location: 3790 - 4857 (-)
Type: CAZyme
Location: 3790 - 4857 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Leuconostoc
Species
Leuconostoc gelidum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.