Cluster: HRGMv2_4337_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4337
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4337_11 | HRGMv2_4337_11_42 | 42284 | 42865 | - | 9.B.105.2.2 |
| pfam | HRGMv2_4337_11 | HRGMv2_4337_11_43 | 42858 | 45773 | - | DEAD | Helicase_C | ResIII | DUF3427 | PLDc_2 | SWI2_SNF2 |
| pfam | HRGMv2_4337_11 | HRGMv2_4337_11_44 | 45937 | 46947 | - | AsnA |
| CAZyme | HRGMv2_4337_11 | HRGMv2_4337_11_45 | 47447 | 48046 | + | GH73 |
| pfam | HRGMv2_4337_11 | HRGMv2_4337_11_46 | 48117 | 48635 | + | Acetyltransf_1 | Acetyltransf_7 |
| TC | HRGMv2_4337_11 | HRGMv2_4337_11_47 | 48679 | 49842 | - | 2.A.1.2.14 |
Gene ID: HRGMv2_4337_11_42
Type: TC
Location: 42284 - 42865 (-)
Type: TC
Location: 42284 - 42865 (-)
Gene ID: HRGMv2_4337_11_43
Type: pfam
Location: 42858 - 45773 (-)
Type: pfam
Location: 42858 - 45773 (-)
Gene ID: HRGMv2_4337_11_44
Type: pfam
Location: 45937 - 46947 (-)
Type: pfam
Location: 45937 - 46947 (-)
Gene ID: HRGMv2_4337_11_45
Type: CAZyme
Location: 47447 - 48046 (+)
Type: CAZyme
Location: 47447 - 48046 (+)
Gene ID: HRGMv2_4337_11_46
Type: pfam
Location: 48117 - 48635 (+)
Type: pfam
Location: 48117 - 48635 (+)
Gene ID: HRGMv2_4337_11_47
Type: TC
Location: 48679 - 49842 (-)
Type: TC
Location: 48679 - 49842 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus ingluviei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.