Cluster: HRGMv2_4337_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4337
- CGC Family ID: CGCFAM_00390
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4337_7 | HRGMv2_4337_7_101 | 98844 | 99086 | + | 3.D.1.6.3 |
| pfam | HRGMv2_4337_7 | HRGMv2_4337_7_102 | 99232 | 99933 | + | dsrm | Ribonuclease_3 | Ribonucleas_3_3 |
| pfam | HRGMv2_4337_7 | HRGMv2_4337_7_103 | 99943 | 103500 | + | SMC_N | SMC_hinge | AAA_15 | AAA_21 | AAA_23 |
| TC | HRGMv2_4337_7 | HRGMv2_4337_7_104 | 103513 | 104985 | + | 3.A.5.1.1 |
| TF | HRGMv2_4337_7 | HRGMv2_4337_7_105 | 105020 | 105361 | + | HTH_11 |
| TC | HRGMv2_4337_7 | HRGMv2_4337_7_106 | 105367 | 106815 | + | 3.A.5.1.1 |
| CAZyme | HRGMv2_4337_7 | HRGMv2_4337_7_107 | 107049 | 108002 | + | GH126 |
Gene ID: HRGMv2_4337_7_101
Type: TC
Location: 98844 - 99086 (+)
Type: TC
Location: 98844 - 99086 (+)
Gene ID: HRGMv2_4337_7_102
Type: pfam
Location: 99232 - 99933 (+)
Type: pfam
Location: 99232 - 99933 (+)
Gene ID: HRGMv2_4337_7_103
Type: pfam
Location: 99943 - 103500 (+)
Type: pfam
Location: 99943 - 103500 (+)
Gene ID: HRGMv2_4337_7_104
Type: TC
Location: 103513 - 104985 (+)
Type: TC
Location: 103513 - 104985 (+)
Gene ID: HRGMv2_4337_7_105
Type: TF
Location: 105020 - 105361 (+)
Type: TF
Location: 105020 - 105361 (+)
Gene ID: HRGMv2_4337_7_106
Type: TC
Location: 105367 - 106815 (+)
Type: TC
Location: 105367 - 106815 (+)
Gene ID: HRGMv2_4337_7_107
Type: CAZyme
Location: 107049 - 108002 (+)
Type: CAZyme
Location: 107049 - 108002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus ingluviei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.