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Cluster: HRGMv2_4336_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4336_7 HRGMv2_4336_7_7 6648 7715 + GT4
TF HRGMv2_4336_7 HRGMv2_4336_7_8 7752 8237 + MerR
pfam HRGMv2_4336_7 HRGMv2_4336_7_9 8234 9151 + PseudoU_synth_2
TC HRGMv2_4336_7 HRGMv2_4336_7_10 9188 9907 - 1.A.8.13.3
TC HRGMv2_4336_7 HRGMv2_4336_7_11 10197 11552 + 2.A.8.1.1
pfam HRGMv2_4336_7 HRGMv2_4336_7_12 11654 12391 + DUF1003
TC HRGMv2_4336_7 HRGMv2_4336_7_13 12404 14560 - 3.A.3.5.2
TF HRGMv2_4336_7 HRGMv2_4336_7_14 14550 14999 - Pencillinase_R
TC HRGMv2_4336_7 HRGMv2_4336_7_15 15089 16537 + 4.C.1.1.6
Gene ID: HRGMv2_4336_7_7
Type: CAZyme
Location: 6648 - 7715 (+)
Gene ID: HRGMv2_4336_7_8
Type: TF
Location: 7752 - 8237 (+)
Gene ID: HRGMv2_4336_7_9
Type: pfam
Location: 8234 - 9151 (+)
Gene ID: HRGMv2_4336_7_10
Type: TC
Location: 9188 - 9907 (-)
Gene ID: HRGMv2_4336_7_11
Type: TC
Location: 10197 - 11552 (+)
Gene ID: HRGMv2_4336_7_12
Type: pfam
Location: 11654 - 12391 (+)
Gene ID: HRGMv2_4336_7_13
Type: TC
Location: 12404 - 14560 (-)
Gene ID: HRGMv2_4336_7_14
Type: TF
Location: 14550 - 14999 (-)
Gene ID: HRGMv2_4336_7_15
Type: TC
Location: 15089 - 16537 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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