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Cluster: HRGMv2_4336_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4336_2 HRGMv2_4336_2_243 254498 256141 - GH13_31
CAZyme HRGMv2_4336_2 HRGMv2_4336_2_244 256160 257788 - GH13_31
CAZyme HRGMv2_4336_2 HRGMv2_4336_2_245 257799 259583 - CBM34 | GH13_20
TC HRGMv2_4336_2 HRGMv2_4336_2_246 259633 260736 - 3.A.1.1.27
TC HRGMv2_4336_2 HRGMv2_4336_2_247 261088 262320 + 3.A.1.1.27
TC HRGMv2_4336_2 HRGMv2_4336_2_248 262382 263743 + 3.A.1.1.27
TC HRGMv2_4336_2 HRGMv2_4336_2_249 263746 264594 + 3.A.1.1.27
TF HRGMv2_4336_2 HRGMv2_4336_2_250 264656 265651 + LacI
TC HRGMv2_4336_2 HRGMv2_4336_2_251 265842 266684 + 2.A.115.1.1
TC HRGMv2_4336_2 HRGMv2_4336_2_252 266718 268115 - 2.A.3.1.20
TF HRGMv2_4336_2 HRGMv2_4336_2_253 268249 269796 - 0037176
TC HRGMv2_4336_2 HRGMv2_4336_2_254 269967 271232 + 2.A.1.6.2
Gene ID: HRGMv2_4336_2_243
Type: CAZyme
Location: 254498 - 256141 (-)
Gene ID: HRGMv2_4336_2_244
Type: CAZyme
Location: 256160 - 257788 (-)
Gene ID: HRGMv2_4336_2_245
Type: CAZyme
Location: 257799 - 259583 (-)
Gene ID: HRGMv2_4336_2_246
Type: TC
Location: 259633 - 260736 (-)
Gene ID: HRGMv2_4336_2_247
Type: TC
Location: 261088 - 262320 (+)
Gene ID: HRGMv2_4336_2_248
Type: TC
Location: 262382 - 263743 (+)
Gene ID: HRGMv2_4336_2_249
Type: TC
Location: 263746 - 264594 (+)
Gene ID: HRGMv2_4336_2_250
Type: TF
Location: 264656 - 265651 (+)
Gene ID: HRGMv2_4336_2_251
Type: TC
Location: 265842 - 266684 (+)
Gene ID: HRGMv2_4336_2_252
Type: TC
Location: 266718 - 268115 (-)
Gene ID: HRGMv2_4336_2_253
Type: TF
Location: 268249 - 269796 (-)
Gene ID: HRGMv2_4336_2_254
Type: TC
Location: 269967 - 271232 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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