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Cluster: HRGMv2_4334_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4334_12 HRGMv2_4334_12_22 27565 28329 + GH25
pfam HRGMv2_4334_12 HRGMv2_4334_12_23 28420 28788 - DUF4828
pfam HRGMv2_4334_12 HRGMv2_4334_12_24 29007 30008 + GFO_IDH_MocA | GFO_IDH_MocA_C3
TC HRGMv2_4334_12 HRGMv2_4334_12_25 30024 31379 + 3.A.18.1.1
NULL(UNKNOWN) HRGMv2_4334_12 HRGMv2_4334_12_26 31873 32136 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4334_12 HRGMv2_4334_12_27 32386 32838 + Usp
TC HRGMv2_4334_12 HRGMv2_4334_12_28 32997 34352 + 2.A.8.1.1
CAZyme HRGMv2_4334_12 HRGMv2_4334_12_29 34498 35439 - GT2
pfam HRGMv2_4334_12 HRGMv2_4334_12_30 35872 37005 + Epimerase_2
pfam HRGMv2_4334_12 HRGMv2_4334_12_31 36998 37855 + NERD
TC HRGMv2_4334_12 HRGMv2_4334_12_32 37877 38815 + 9.B.126.2.5
Gene ID: HRGMv2_4334_12_22
Type: CAZyme
Location: 27565 - 28329 (+)
Gene ID: HRGMv2_4334_12_23
Type: pfam
Location: 28420 - 28788 (-)
Gene ID: HRGMv2_4334_12_24
Type: pfam
Location: 29007 - 30008 (+)
Gene ID: HRGMv2_4334_12_25
Type: TC
Location: 30024 - 31379 (+)
Gene ID: HRGMv2_4334_12_26
Type:
Location: 31873 - 32136 (+)
Gene ID: HRGMv2_4334_12_27
Type: pfam
Location: 32386 - 32838 (+)
Gene ID: HRGMv2_4334_12_28
Type: TC
Location: 32997 - 34352 (+)
Gene ID: HRGMv2_4334_12_29
Type: CAZyme
Location: 34498 - 35439 (-)
Gene ID: HRGMv2_4334_12_30
Type: pfam
Location: 35872 - 37005 (+)
Gene ID: HRGMv2_4334_12_31
Type: pfam
Location: 36998 - 37855 (+)
Gene ID: HRGMv2_4334_12_32
Type: TC
Location: 37877 - 38815 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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