Cluster: HRGMv2_4330_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4330
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4330_4 | HRGMv2_4330_4_14 | 18373 | 19920 | - | 8.A.3.1.2 |
| pfam | HRGMv2_4330_4 | HRGMv2_4330_4_15 | 20578 | 25524 | + | CarboxypepD_reg | CarboxypepD_reg | CBM77 |
| NULL(UNKNOWN) | HRGMv2_4330_4 | HRGMv2_4330_4_16 | 25537 | 25689 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4330_4 | HRGMv2_4330_4_17 | 25791 | 28289 | - | PL1 |
| TC | HRGMv2_4330_4 | HRGMv2_4330_4_18 | 28471 | 29490 | + | 2.A.98.1.4 |
| CAZyme | HRGMv2_4330_4 | HRGMv2_4330_4_19 | 29712 | 32717 | + | CBM13 | PL9_1 |
| pfam | HRGMv2_4330_4 | HRGMv2_4330_4_20 | 32764 | 34362 | - | Mannitol_dh | Mannitol_dh_C |
| TF | HRGMv2_4330_4 | HRGMv2_4330_4_21 | 34485 | 35159 | + | GntR |
| TC | HRGMv2_4330_4 | HRGMv2_4330_4_22 | 35195 | 36505 | - | 2.A.66.1.23 |
| TC | HRGMv2_4330_4 | HRGMv2_4330_4_23 | 36617 | 38518 | - | 3.A.1.135.5 |
| TC | HRGMv2_4330_4 | HRGMv2_4330_4_24 | 38520 | 40268 | - | 3.A.1.135.5 |
Gene ID: HRGMv2_4330_4_14
Type: TC
Location: 18373 - 19920 (-)
Type: TC
Location: 18373 - 19920 (-)
Gene ID: HRGMv2_4330_4_15
Type: pfam
Location: 20578 - 25524 (+)
Type: pfam
Location: 20578 - 25524 (+)
Gene ID: HRGMv2_4330_4_16
Type:
Location: 25537 - 25689 (+)
Type:
Location: 25537 - 25689 (+)
Gene ID: HRGMv2_4330_4_17
Type: CAZyme
Location: 25791 - 28289 (-)
Type: CAZyme
Location: 25791 - 28289 (-)
Gene ID: HRGMv2_4330_4_18
Type: TC
Location: 28471 - 29490 (+)
Type: TC
Location: 28471 - 29490 (+)
Gene ID: HRGMv2_4330_4_19
Type: CAZyme
Location: 29712 - 32717 (+)
Type: CAZyme
Location: 29712 - 32717 (+)
Gene ID: HRGMv2_4330_4_20
Type: pfam
Location: 32764 - 34362 (-)
Type: pfam
Location: 32764 - 34362 (-)
Gene ID: HRGMv2_4330_4_21
Type: TF
Location: 34485 - 35159 (+)
Type: TF
Location: 34485 - 35159 (+)
Gene ID: HRGMv2_4330_4_22
Type: TC
Location: 35195 - 36505 (-)
Type: TC
Location: 35195 - 36505 (-)
Gene ID: HRGMv2_4330_4_23
Type: TC
Location: 36617 - 38518 (-)
Type: TC
Location: 36617 - 38518 (-)
Gene ID: HRGMv2_4330_4_24
Type: TC
Location: 38520 - 40268 (-)
Type: TC
Location: 38520 - 40268 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
CAG-274
Genus
Gallispira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.