Cluster: HRGMv2_4330_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4330
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4330_22 | HRGMv2_4330_22_17 | 18205 | 19095 | + | 3.A.1.1.36 |
| TC | HRGMv2_4330_22 | HRGMv2_4330_22_18 | 19085 | 19909 | + | 3.A.1.1.36 |
| TC | HRGMv2_4330_22 | HRGMv2_4330_22_19 | 19922 | 21058 | + | 3.A.1.1.24 |
| pfam | HRGMv2_4330_22 | HRGMv2_4330_22_20 | 21071 | 21868 | + | AP_endonuc_2 |
| TC | HRGMv2_4330_22 | HRGMv2_4330_22_21 | 21926 | 23047 | - | 9.B.141.1.1 |
| pfam | HRGMv2_4330_22 | HRGMv2_4330_22_22 | 23302 | 23898 | + | Zn_dep_PLPC |
| CAZyme | HRGMv2_4330_22 | HRGMv2_4330_22_23 | 23911 | 25044 | + | GT4 |
Gene ID: HRGMv2_4330_22_17
Type: TC
Location: 18205 - 19095 (+)
Type: TC
Location: 18205 - 19095 (+)
Gene ID: HRGMv2_4330_22_18
Type: TC
Location: 19085 - 19909 (+)
Type: TC
Location: 19085 - 19909 (+)
Gene ID: HRGMv2_4330_22_19
Type: TC
Location: 19922 - 21058 (+)
Type: TC
Location: 19922 - 21058 (+)
Gene ID: HRGMv2_4330_22_20
Type: pfam
Location: 21071 - 21868 (+)
Type: pfam
Location: 21071 - 21868 (+)
Gene ID: HRGMv2_4330_22_21
Type: TC
Location: 21926 - 23047 (-)
Type: TC
Location: 21926 - 23047 (-)
Gene ID: HRGMv2_4330_22_22
Type: pfam
Location: 23302 - 23898 (+)
Type: pfam
Location: 23302 - 23898 (+)
Gene ID: HRGMv2_4330_22_23
Type: CAZyme
Location: 23911 - 25044 (+)
Type: CAZyme
Location: 23911 - 25044 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
CAG-274
Genus
Gallispira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.