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Cluster: HRGMv2_4329_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4329_15 HRGMv2_4329_15_27 28447 29556 - 3.A.1.1.26
TF HRGMv2_4329_15 HRGMv2_4329_15_28 29646 30653 - LacI
CAZyme HRGMv2_4329_15 HRGMv2_4329_15_29 30666 33674 - GH2
TC HRGMv2_4329_15 HRGMv2_4329_15_30 34071 35387 + 3.A.1.1.34
TC HRGMv2_4329_15 HRGMv2_4329_15_31 35498 36361 + 3.A.1.1.4
TC HRGMv2_4329_15 HRGMv2_4329_15_32 36363 37178 + 3.A.1.1.34
TC HRGMv2_4329_15 HRGMv2_4329_15_33 37596 38789 + 2.A.27.1.1
STP HRGMv2_4329_15 HRGMv2_4329_15_34 39003 39566 - TetR_N
TC HRGMv2_4329_15 HRGMv2_4329_15_35 39763 41658 + 3.A.3.6.16
Gene ID: HRGMv2_4329_15_27
Type: TC
Location: 28447 - 29556 (-)
Gene ID: HRGMv2_4329_15_28
Type: TF
Location: 29646 - 30653 (-)
Gene ID: HRGMv2_4329_15_29
Type: CAZyme
Location: 30666 - 33674 (-)
Gene ID: HRGMv2_4329_15_30
Type: TC
Location: 34071 - 35387 (+)
Gene ID: HRGMv2_4329_15_31
Type: TC
Location: 35498 - 36361 (+)
Gene ID: HRGMv2_4329_15_32
Type: TC
Location: 36363 - 37178 (+)
Gene ID: HRGMv2_4329_15_33
Type: TC
Location: 37596 - 38789 (+)
Gene ID: HRGMv2_4329_15_34
Type: STP
Location: 39003 - 39566 (-)
Gene ID: HRGMv2_4329_15_35
Type: TC
Location: 39763 - 41658 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4329_15_35 vegetarian > vegan 2.18494 0.01560

🧭 Explore Read Mapping of CGC

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