Cluster: HRGMv2_4329_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4329
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4329_5 | HRGMv2_4329_5_66 | 85805 | 86641 | + | 2.A.115.1.1 |
| CAZyme | HRGMv2_4329_5 | HRGMv2_4329_5_67 | 86873 | 89530 | + | GT51 |
| pfam | HRGMv2_4329_5 | HRGMv2_4329_5_68 | 89568 | 92498 | + | Transpeptidase | PBP_dimer |
| TC | HRGMv2_4329_5 | HRGMv2_4329_5_69 | 92513 | 93661 | + | 2.A.103.1.2 |
Gene ID: HRGMv2_4329_5_66
Type: TC
Location: 85805 - 86641 (+)
Type: TC
Location: 85805 - 86641 (+)
Gene ID: HRGMv2_4329_5_67
Type: CAZyme
Location: 86873 - 89530 (+)
Type: CAZyme
Location: 86873 - 89530 (+)
Gene ID: HRGMv2_4329_5_68
Type: pfam
Location: 89568 - 92498 (+)
Type: pfam
Location: 89568 - 92498 (+)
Gene ID: HRGMv2_4329_5_69
Type: TC
Location: 92513 - 93661 (+)
Type: TC
Location: 92513 - 93661 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.