Cluster: HRGMv2_4329_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4329
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4329_5 | HRGMv2_4329_5_4 | 3432 | 4058 | + | 9.B.104.1.3 |
| pfam | HRGMv2_4329_5 | HRGMv2_4329_5_5 | 4045 | 4461 | + | HIT | DcpS_C |
| STP | HRGMv2_4329_5 | HRGMv2_4329_5_6 | 4489 | 5025 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_4329_5 | HRGMv2_4329_5_7 | 5016 | 6089 | - | GT28 |
Gene ID: HRGMv2_4329_5_4
Type: TC
Location: 3432 - 4058 (+)
Type: TC
Location: 3432 - 4058 (+)
Gene ID: HRGMv2_4329_5_5
Type: pfam
Location: 4045 - 4461 (+)
Type: pfam
Location: 4045 - 4461 (+)
Gene ID: HRGMv2_4329_5_6
Type: STP
Location: 4489 - 5025 (+)
Type: STP
Location: 4489 - 5025 (+)
Gene ID: HRGMv2_4329_5_7
Type: CAZyme
Location: 5016 - 6089 (-)
Type: CAZyme
Location: 5016 - 6089 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.