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Cluster: HRGMv2_4329_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4329_4 HRGMv2_4329_4_66 73393 74496 - GT2
pfam HRGMv2_4329_4 HRGMv2_4329_4_67 74770 75801 - DUF6612
STP HRGMv2_4329_4 HRGMv2_4329_4_68 75955 77220 - PALP
TC HRGMv2_4329_4 HRGMv2_4329_4_69 77234 78322 - 2.A.4.7.6
pfam HRGMv2_4329_4 HRGMv2_4329_4_70 78491 82147 - RNA_pol_Rpb1_2 | RNA_pol_Rpb1_2 | RNA_pol_Rpb1_3 | RNA_pol_Rpb1_1 | RNA_pol_Rpb1_5 | RNA_pol_Rpb1_4
pfam HRGMv2_4329_4 HRGMv2_4329_4_71 82169 86044 - RNA_pol_Rpb2_6 | RNA_pol_Rpb2_7 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_2 | RNA_pol_Rpb2_1 | RNA_pol_Rpb2_3 | RNA_pol_Rpb2_45
TC HRGMv2_4329_4 HRGMv2_4329_4_72 86361 86846 + 3.D.1.5.1
TC HRGMv2_4329_4 HRGMv2_4329_4_73 86843 88741 + 3.D.1.5.1
STP HRGMv2_4329_4 HRGMv2_4329_4_74 88754 90463 + Fer4
pfam HRGMv2_4329_4 HRGMv2_4329_4_75 90612 91463 - CN_hydrolase
TC HRGMv2_4329_4 HRGMv2_4329_4_76 91526 93415 - 3.A.16.1.2
TC HRGMv2_4329_4 HRGMv2_4329_4_77 93696 95075 - 2.A.66.1.45
TC HRGMv2_4329_4 HRGMv2_4329_4_78 95394 96005 + 2.A.115.2.14
TC HRGMv2_4329_4 HRGMv2_4329_4_79 96150 96713 - 2.A.51.1.6
pfam HRGMv2_4329_4 HRGMv2_4329_4_80 96710 97276 - Chromate_transp
TF HRGMv2_4329_4 HRGMv2_4329_4_81 97301 98068 - MarR
TC HRGMv2_4329_4 HRGMv2_4329_4_82 98087 99481 - 3.A.6.1.1
Gene ID: HRGMv2_4329_4_66
Type: CAZyme
Location: 73393 - 74496 (-)
Gene ID: HRGMv2_4329_4_67
Type: pfam
Location: 74770 - 75801 (-)
Gene ID: HRGMv2_4329_4_68
Type: STP
Location: 75955 - 77220 (-)
Gene ID: HRGMv2_4329_4_69
Type: TC
Location: 77234 - 78322 (-)
Gene ID: HRGMv2_4329_4_70
Type: pfam
Location: 78491 - 82147 (-)
Gene ID: HRGMv2_4329_4_71
Type: pfam
Location: 82169 - 86044 (-)
Gene ID: HRGMv2_4329_4_72
Type: TC
Location: 86361 - 86846 (+)
Gene ID: HRGMv2_4329_4_73
Type: TC
Location: 86843 - 88741 (+)
Gene ID: HRGMv2_4329_4_74
Type: STP
Location: 88754 - 90463 (+)
Gene ID: HRGMv2_4329_4_75
Type: pfam
Location: 90612 - 91463 (-)
Gene ID: HRGMv2_4329_4_76
Type: TC
Location: 91526 - 93415 (-)
Gene ID: HRGMv2_4329_4_77
Type: TC
Location: 93696 - 95075 (-)
Gene ID: HRGMv2_4329_4_78
Type: TC
Location: 95394 - 96005 (+)
Gene ID: HRGMv2_4329_4_79
Type: TC
Location: 96150 - 96713 (-)
Gene ID: HRGMv2_4329_4_80
Type: pfam
Location: 96710 - 97276 (-)
Gene ID: HRGMv2_4329_4_81
Type: TF
Location: 97301 - 98068 (-)
Gene ID: HRGMv2_4329_4_82
Type: TC
Location: 98087 - 99481 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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