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Cluster: HRGMv2_4329_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4329_4 HRGMv2_4329_4_31 30818 31576 - 3.A.1.7.5
TC HRGMv2_4329_4 HRGMv2_4329_4_32 31592 32467 - 3.A.1.7.5
TC HRGMv2_4329_4 HRGMv2_4329_4_33 32467 33399 - 3.A.1.7.5
pfam HRGMv2_4329_4 HRGMv2_4329_4_34 33475 34434 - PBP_like | PBP_like_2
pfam HRGMv2_4329_4 HRGMv2_4329_4_35 34813 36711 - LytR_cpsA_psr
TC HRGMv2_4329_4 HRGMv2_4329_4_36 36727 38145 - 9.B.18.1.1
CAZyme HRGMv2_4329_4 HRGMv2_4329_4_37 38309 39436 - GT2
CAZyme HRGMv2_4329_4 HRGMv2_4329_4_38 39426 41627 - GT2 | GT2
CAZyme HRGMv2_4329_4 HRGMv2_4329_4_39 41654 42655 - GT2
Gene ID: HRGMv2_4329_4_31
Type: TC
Location: 30818 - 31576 (-)
Gene ID: HRGMv2_4329_4_32
Type: TC
Location: 31592 - 32467 (-)
Gene ID: HRGMv2_4329_4_33
Type: TC
Location: 32467 - 33399 (-)
Gene ID: HRGMv2_4329_4_34
Type: pfam
Location: 33475 - 34434 (-)
Gene ID: HRGMv2_4329_4_35
Type: pfam
Location: 34813 - 36711 (-)
Gene ID: HRGMv2_4329_4_36
Type: TC
Location: 36727 - 38145 (-)
Gene ID: HRGMv2_4329_4_37
Type: CAZyme
Location: 38309 - 39436 (-)
Gene ID: HRGMv2_4329_4_38
Type: CAZyme
Location: 39426 - 41627 (-)
Gene ID: HRGMv2_4329_4_39
Type: CAZyme
Location: 41654 - 42655 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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