Cluster: HRGMv2_4329_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4329
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4329_1 | HRGMv2_4329_1_34 | 40577 | 41689 | - | 3.A.1.1.24 |
| CAZyme | HRGMv2_4329_1 | HRGMv2_4329_1_35 | 41711 | 43564 | - | GH13_4 |
| pfam | HRGMv2_4329_1 | HRGMv2_4329_1_36 | 43578 | 44027 | - | DUF6106 |
| CAZyme | HRGMv2_4329_1 | HRGMv2_4329_1_37 | 44024 | 46231 | - | GH36 |
| TC | HRGMv2_4329_1 | HRGMv2_4329_1_38 | 46249 | 47085 | - | 3.A.1.1.34 |
| TC | HRGMv2_4329_1 | HRGMv2_4329_1_39 | 47100 | 47996 | - | 3.A.1.1.11 |
| TC | HRGMv2_4329_1 | HRGMv2_4329_1_40 | 48015 | 49307 | - | 3.A.1.1.44 |
Gene ID: HRGMv2_4329_1_34
Type: TC
Location: 40577 - 41689 (-)
Type: TC
Location: 40577 - 41689 (-)
Gene ID: HRGMv2_4329_1_35
Type: CAZyme
Location: 41711 - 43564 (-)
Type: CAZyme
Location: 41711 - 43564 (-)
Gene ID: HRGMv2_4329_1_36
Type: pfam
Location: 43578 - 44027 (-)
Type: pfam
Location: 43578 - 44027 (-)
Gene ID: HRGMv2_4329_1_37
Type: CAZyme
Location: 44024 - 46231 (-)
Type: CAZyme
Location: 44024 - 46231 (-)
Gene ID: HRGMv2_4329_1_38
Type: TC
Location: 46249 - 47085 (-)
Type: TC
Location: 46249 - 47085 (-)
Gene ID: HRGMv2_4329_1_39
Type: TC
Location: 47100 - 47996 (-)
Type: TC
Location: 47100 - 47996 (-)
Gene ID: HRGMv2_4329_1_40
Type: TC
Location: 48015 - 49307 (-)
Type: TC
Location: 48015 - 49307 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Copromonas
Species
Copromonas faecavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.