dbCAN Logo

Cluster: HRGMv2_4329_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4329_32 HRGMv2_4329_32_2 1397 3013 + 3.A.1.5.11
TC HRGMv2_4329_32 HRGMv2_4329_32_3 3180 4106 + 3.A.1.5.11
TC HRGMv2_4329_32 HRGMv2_4329_32_4 4120 5010 + 3.A.1.5.11
TC HRGMv2_4329_32 HRGMv2_4329_32_5 5021 6010 + 3.A.1.5.15
TC HRGMv2_4329_32 HRGMv2_4329_32_6 6003 6968 + 3.A.1.5.15
pfam HRGMv2_4329_32 HRGMv2_4329_32_7 6986 8020 + URO-D
peptidase HRGMv2_4329_32 HRGMv2_4329_32_8 8128 9330 + M38.UPW
TC HRGMv2_4329_32 HRGMv2_4329_32_9 9757 11589 + 3.D.1.5.1
TC HRGMv2_4329_32 HRGMv2_4329_32_10 11583 13340 + 3.D.1.7.1
pfam HRGMv2_4329_32 HRGMv2_4329_32_11 13723 14304 + Pept_tRNA_hydro
pfam HRGMv2_4329_32 HRGMv2_4329_32_12 14267 17917 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TC HRGMv2_4329_32 HRGMv2_4329_32_13 18068 19561 - 4.C.1.1.6
pfam HRGMv2_4329_32 HRGMv2_4329_32_14 19573 19800 - PP-binding
TC HRGMv2_4329_32 HRGMv2_4329_32_15 19812 21389 - 2.A.50.2.1
NULL(UNKNOWN) HRGMv2_4329_32 HRGMv2_4329_32_16 21507 23150 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4329_32 HRGMv2_4329_32_17 23240 25420 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4329_32 HRGMv2_4329_32_18 25706 26458 - 3.A.1.103.1
pfam HRGMv2_4329_32 HRGMv2_4329_32_19 26469 27887 - ABC2_membrane
CAZyme HRGMv2_4329_32 HRGMv2_4329_32_20 27903 30314 - GT2
pfam HRGMv2_4329_32 HRGMv2_4329_32_21 30323 31333 - Glycos_transf_2
CAZyme HRGMv2_4329_32 HRGMv2_4329_32_22 31330 32508 - GT4
Gene ID: HRGMv2_4329_32_2
Type: TC
Location: 1397 - 3013 (+)
Gene ID: HRGMv2_4329_32_3
Type: TC
Location: 3180 - 4106 (+)
Gene ID: HRGMv2_4329_32_4
Type: TC
Location: 4120 - 5010 (+)
Gene ID: HRGMv2_4329_32_5
Type: TC
Location: 5021 - 6010 (+)
Gene ID: HRGMv2_4329_32_6
Type: TC
Location: 6003 - 6968 (+)
Gene ID: HRGMv2_4329_32_7
Type: pfam
Location: 6986 - 8020 (+)
Gene ID: HRGMv2_4329_32_8
Type: peptidase
Location: 8128 - 9330 (+)
Gene ID: HRGMv2_4329_32_9
Type: TC
Location: 9757 - 11589 (+)
Gene ID: HRGMv2_4329_32_10
Type: TC
Location: 11583 - 13340 (+)
Gene ID: HRGMv2_4329_32_11
Type: pfam
Location: 13723 - 14304 (+)
Gene ID: HRGMv2_4329_32_12
Type: pfam
Location: 14267 - 17917 (+)
Gene ID: HRGMv2_4329_32_13
Type: TC
Location: 18068 - 19561 (-)
Gene ID: HRGMv2_4329_32_14
Type: pfam
Location: 19573 - 19800 (-)
Gene ID: HRGMv2_4329_32_15
Type: TC
Location: 19812 - 21389 (-)
Gene ID: HRGMv2_4329_32_16
Type:
Location: 21507 - 23150 (-)
Gene ID: HRGMv2_4329_32_17
Type:
Location: 23240 - 25420 (-)
Gene ID: HRGMv2_4329_32_18
Type: TC
Location: 25706 - 26458 (-)
Gene ID: HRGMv2_4329_32_19
Type: pfam
Location: 26469 - 27887 (-)
Gene ID: HRGMv2_4329_32_20
Type: CAZyme
Location: 27903 - 30314 (-)
Gene ID: HRGMv2_4329_32_21
Type: pfam
Location: 30323 - 31333 (-)
Gene ID: HRGMv2_4329_32_22
Type: CAZyme
Location: 31330 - 32508 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List